"How to connect to SQL Server" matching MCP connectors:
GET /v1/connectors — MCP directory API referenceMatching Connector Tools:
Protein research over UniProtKB — search by function, fetch curated records, map IDs, proteomes.
Look up allele frequencies by ancestry, gene constraint, variants, and coverage over gnomAD.
Link compounds to protein targets, rank bioactivity, and look up drug mechanisms and indications.
Search GBIF species taxonomy, occurrence records, datasets, and publishers.
Look up genes, sequences, variants, homologs, and cross-database xrefs from Ensembl REST.
Official answers about Helena Bioinformatics and its products, with citations to public sources.
Monarch biomedical knowledge graph — diseases, phenotypes, genes, variants
UniProt MCP — protein sequence + function database.
InterPro MCP (EBI) — protein family / domain / functional-site classification.
Ensembl REST — vertebrate genomes, sequences, comparative genomics, variation
WikiPathways MCP — open community pathway database.
Query STRING interactions, enrichment, annotations, homology, and PPI networks.
A unified biomedical graph database that integrates 50+ primary data sources — genes, proteins, compounds, diseases, pathways, and clinical data — into a single queryable graph with billions of cross-reference edges. Its native MCP server gives LLMs direct access to structured, authoritative biomedical data, complementing their reasoning with reliable identifiers and up-to-date database content.
QuickGO (EBI) MCP — Gene Ontology browser.
NCI CACTUS Chemical Identifier Resolver MCP.
IntAct (EBI) molecular-interaction database MCP. Keyless.
cBioPortal MCP — cancer genomics portal.
