"How to Use a Web Browser" matching MCP connectors:
GET /v1/connectors – MCP directory API referenceMatching Connector Tools:
Scientific plotting for bioinformatics with about 160 free modules. Anonymous access supported.
Pharmacogenomics for AI agents: cited drug–gene, gene and rsID lookups plus a medication screen.
Official answers about Helena Bioinformatics and its products, with citations to public sources.
Link compounds to protein targets, rank bioactivity, and look up drug mechanisms and indications.
Annotate and classify human genetic variants with GeneBe (ACMG, gnomAD, ClinVar). Research use only.
Agent research API for 15 disease areas, plus a T1D cure lab, sourced evidence ledger and models.
Find open biology and chemistry AI models, bioinformatics tools and databases, and run them online.
A molecular biology bench for AI assistants: cloning and assembly, PCR and primer design, CRISPR, Sanger verification, qPCR and dPCR, alignment and phylogenetics, genomics, proteins and cheminformatics. Calculated by engines checked against the field's reference tools, with every result explained. No auth, stateless, free.
BioBricks: the site's own MCP server — dataset, enquiry (enquiry = a human handoff, not a...
HLA nomenclature and match checks against a pinned IPD-IMGT/HLA release. No patient identifiers.
A unified biomedical graph database that integrates 50+ primary data sources — genes, proteins, compounds, diseases, pathways, and clinical data — into a single queryable graph with billions of cross-reference edges. Its native MCP server gives LLMs direct access to structured, authoritative biomedical data, complementing their reasoning with reliable identifiers and up-to-date database content.
UCSC Genome Browser REST API — reference genome assemblies for ~250 species, the annotation tracks…
WikiPathways MCP — open community pathway database.
QuickGO (EBI) MCP — Gene Ontology browser.
UniProt MCP — protein sequence + function database.
IntAct (EBI) molecular-interaction database MCP. Keyless.
Rhea MCP — expert-curated database of biochemical reactions.
PubTator 3 MCP — biomedical entity search, literature search with entity highlighting, and…
EBI PRIDE Archive MCP — proteomics (mass-spectrometry) data repository. Keyless. Wraps the public…
PomBase MCP — the fission yeast (Schizosaccharomyces pombe) model-organism database.
SGD (Saccharomyces Genome Database) MCP.
NCBI Datasets — the US National Library of Medicine's genome, gene and taxonomy reference service…
NCI Thesaurus concepts and the other cancer-research vocabularies served by NCI Enterprise…
Human Protein Atlas (HPA) MCP — keyless.
KEGG REST MCP — Kyoto Encyclopedia of Genes and Genomes.
UMLS MCP — wraps the NLM UMLS Terminology Services REST API (uts-ws.nlm.nih.gov/rest)
PDBe (Protein Data Bank in Europe, EBI) MCP.
MyVariant.info MCP. Aggregated human genetic-variant annotation: dbSNP, ClinVar clinical…
Mondo — condition-string resolver onto the Mondo Disease Ontology.
g:Profiler (University of Tartu) — functional enrichment analysis for a gene list against GO…
