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Official answers about Helena Bioinformatics and its products, with citations to public sources.
Link compounds to protein targets, rank bioactivity, and look up drug mechanisms and indications.
CIViC — Clinical Interpretation of Variants in Cancer.
CATNAP (Compile, Analyze, and Tally Neutralizing Antibody Panels) + the LANL HIV Molecular…
cBioPortal MCP — cancer genomics portal.
Gene expression experiments and the brain structure ontology from the Allen Institute's Brain…
AlphaFold DB MCP — predicted protein structures.
MGnify — EMBL-EBI's metagenomics resource: public microbiome studies, the biome vocabulary they…
g:Profiler (University of Tartu) — functional enrichment analysis for a gene list against GO…
NCI Thesaurus concepts and the other cancer-research vocabularies served by NCI Enterprise…
European Nucleotide Archive (ENA) — EMBL-EBI's public record of raw sequencing runs, assemblies…
DrugBank MCP — wraps the DrugBank Clinical API (api.drugbank.com)
RCSB PDB MCP — experimentally determined macromolecular structures.
UMLS MCP — wraps the NLM UMLS Terminology Services REST API (uts-ws.nlm.nih.gov/rest)
A unified biomedical graph database that integrates 50+ primary data sources — genes, proteins, compounds, diseases, pathways, and clinical data — into a single queryable graph with billions of cross-reference edges. Its native MCP server gives LLMs direct access to structured, authoritative biomedical data, complementing their reasoning with reliable identifiers and up-to-date database content.
NCI CACTUS Chemical Identifier Resolver MCP.