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Official answers about Helena Bioinformatics and its products, with citations to public sources.
Link compounds to protein targets, rank bioactivity, and look up drug mechanisms and indications.
A unified biomedical graph database that integrates 50+ primary data sources — genes, proteins, compounds, diseases, pathways, and clinical data — into a single queryable graph with billions of cross-reference edges. Its native MCP server gives LLMs direct access to structured, authoritative biomedical data, complementing their reasoning with reliable identifiers and up-to-date database content.
IntAct (EBI) molecular-interaction database MCP. Keyless.
NCBI Datasets — the US National Library of Medicine's genome, gene and taxonomy reference service…
NCI Thesaurus concepts and the other cancer-research vocabularies served by NCI Enterprise…
KEGG REST MCP — Kyoto Encyclopedia of Genes and Genomes.
PDBe (Protein Data Bank in Europe, EBI) MCP.
MyVariant.info MCP. Aggregated human genetic-variant annotation: dbSNP, ClinVar clinical…
Mondo — condition-string resolver onto the Mondo Disease Ontology.
g:Profiler (University of Tartu) — functional enrichment analysis for a gene list against GO…
European Nucleotide Archive (ENA) — EMBL-EBI's public record of raw sequencing runs, assemblies…
dbSNP refSNP records and HGVS/SPDI/rsID normalization for human genetic variants, from NCBI…
MGnify — EMBL-EBI's metagenomics resource: public microbiome studies, the biome vocabulary they…
MetaboLights MCP — EBI's metabolomics study repository.
InterPro MCP (EBI) — protein family / domain / functional-site classification.
CATNAP (Compile, Analyze, and Tally Neutralizing Antibody Panels) + the LANL HIV Molecular…
Monarch Initiative MCP — biomedical knowledge graph.
HERB 2.0 (herb.ac.cn) — Traditional Chinese Medicine herb/ingredient/target/ disease knowledge…
gnomAD MCP — Broad Institute Genome Aggregation Database (GraphQL).
CIViC — Clinical Interpretation of Variants in Cancer.
NCI CACTUS Chemical Identifier Resolver MCP.
BOLD Systems (Barcode of Life Data System, University of Guelph) — the global DNA barcode…
BindingDB — measured protein/small-molecule binding affinities.
GWAS Catalog (EBI/NHGRI) MCP — curated catalog of genome-wide association studies. Look up a SNP…
DrugBank MCP — wraps the DrugBank Clinical API (api.drugbank.com)
