"How to Connect to MongoDB" matching MCP connectors:
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Link compounds to protein targets, rank bioactivity, and look up drug mechanisms and indications.
Official answers about Helena Bioinformatics and its products, with citations to public sources.
A unified biomedical graph database that integrates 50+ primary data sources — genes, proteins, compounds, diseases, pathways, and clinical data — into a single queryable graph with billions of cross-reference edges. Its native MCP server gives LLMs direct access to structured, authoritative biomedical data, complementing their reasoning with reliable identifiers and up-to-date database content.
Chemical molecular intelligence platform covering compound search, structure analysis, physicochemical property retrieval, and molecular interaction profiling.
PatSnap Biology Modality MCP server — access biological sequences, modification records, and antibody-antigen interactions across 200M+ patents.
HERB 2.0 (herb.ac.cn) — Traditional Chinese Medicine herb/ingredient/target/
DrugBank MCP — wraps the DrugBank Clinical API (api.drugbank.com)
Monarch biomedical knowledge graph — diseases, phenotypes, genes, variants
Broad Institute gnomAD genomic variant database (GraphQL)
Bioregistry — meta-registry of biomedical identifier prefixes
GTEx — Genotype-Tissue Expression human gene-expression atlas
Ensembl REST — vertebrate genomes, sequences, comparative genomics, variation
ChEMBL MCP — drug discovery database (EBI).
STRING protein-protein interaction networks across ~12k organisms
Reactome biological pathway database
MyGene.info — gene annotation joining NCBI/Ensembl/UniProt/KEGG/OMIM
EBI PRIDE Archive MCP — proteomics (mass-spectrometry) data repository.
UniProt MCP — protein sequence + function database.
