Retrieve external references like PMIDs, DOIs, and GEO accessions linked to ENCODE experiments for use with PubMed, bioRxiv, or ClinicalTrials.gov tools.
130,895 tools. Last updated 2026-05-07 17:57
"Searching PubMed references and formatting them in Markdown" matching MCP tools:
- Export document content as plain markdown text for external use, sharing, or processing in other applications without additional formatting.MIT
- Retrieve full-text open-access articles from PubMed Central using PubMed or PMC IDs. Access complete article content, structured sections, and references for biomedical research papers.
- Add comments to GitLab issues to provide feedback, updates, or additional information using markdown formatting with mentions and references.Apache 2.0
- Retrieve external cross-references for PubChem compounds. Access PubMed citations, patent IDs, gene/protein associations, and registry numbers with configurable limits and total counts.
- Reply directly to a specific message in a Microsoft Teams channel with text, markdown formatting, mentions, and importance levels.MIT
Matching MCP Servers
- AlicenseAqualityCmaintenanceAn MCP server that provides direct access to PubMed and PubMed Central via the NCBI E-utilities API. It enables AI models to search biomedical literature, retrieve detailed article metadata, and download open-access full texts.Last updated5MIT
- FlicenseAqualityCmaintenanceEnables searching and retrieving detailed information from PubMed articles using the NCBI Entrez API. Supports configurable search parameters including title/abstract filtering and keyword expansion to find relevant scientific publications.Last updated1
Matching MCP Connectors
Search PubMed, fetch articles and full text, generate citations, and explore MeSH terms via NCBI.
Search 36M+ PubMed biomedical articles and ClinicalTrials.gov studies.
- Retrieve PubMed citations and scientific literature references for chemical compounds using PubChem Compound IDs to support research and verification.MIT
- Modify or add content to specific sections in memory documents using Markdown formatting for structured project knowledge management.
- Update markdown content in a Text node. Supports markdown and LaTeX formatting for visual workflows.
- Retrieve PubMed citations and scientific literature references for chemical compounds using PubChem Compound IDs to support research and verification.
- Send messages to Microsoft Teams channels with text, markdown formatting, mentions, attachments, and importance levels for team communication.MIT
- Extract entities, temporal references, question type, and complexity from search queries to understand structure before searching.
- Retrieve PubMed citations and scientific literature references by inputting a PubChem Compound ID (CID) for comprehensive research insights.
- Detect documentation drift by scanning project markdown files to find references to commands, flags, APIs, or files that no longer match the actual codebase.
- Search PubMed for biomedical literature to find relevant research articles and clinical studies using structured queries.
- Retrieve complete metadata for PubMed articles using PMID, including title, abstract, authors, journal details, publication date, DOI, and MeSH terms.MIT
- Search biomedical literature in PubMed using advanced queries with field tags, boolean operators, and date filters to find relevant research articles.MIT
- Retrieve free full-text article links from PubMed Central and publisher sources using a PubMed ID to access biomedical research.MIT
- Find related biomedical articles from PubMed using NCBI's relevance ranking algorithm to expand research exploration.MIT
- Find articles that cite a specific PubMed publication to track forward citations and discover related research.MIT