"Searching PubMed references and formatting them in Markdown" matching MCP servers:

• mcp-pubmed

  benoitleq

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  An MCP server that provides direct access to PubMed and PubMed Central via the NCBI E-utilities API. It enables AI models to search biomedical literature, retrieve detailed article metadata, and download open-access full texts.

  Last updated 2026-03-28

  5

  MIT

• PubMed MCP Server

  emi-dm

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  Enables searching and retrieving detailed information from PubMed articles using the NCBI Entrez API. Supports configurable search parameters including title/abstract filtering and keyword expansion to find relevant scientific publications.

  Last updated 2025-09-25

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• mcp-pubmed

  PetrefiedThunder

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  An MCP server that provides access to PubMed and NCBI's biomedical literature database for searching articles, retrieving metadata, and tracking citations. It enables users to explore related research, browse MeSH vocabulary, and find free full-text links.

  Last updated 2026-04-16

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  6

  MIT

• PubMed MCP Server

  chrismannina

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  A comprehensive Model Context Protocol server that enables advanced PubMed literature search, citation formatting, and research analysis through natural language interactions.

  Last updated 2025-06-18

  454

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  9

  MIT

• PubMed MCP Server

  ncukondo

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  Enables searching and retrieving scientific articles from PubMed using NCBI E-utilities API with features like rate limiting and caching.

  Last updated 2025-12-11

  3

  52

  MIT

• In Memoria

  pi22by7

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  Persistent memory and pattern learning for AI coding assistants via MCP.

  Last updated 2025-12-23

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  166

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• PubMed MCP

  aimiora

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  Enables searching and retrieving academic article metadata from PubMed through a simple HTTP interface. Provides curated article summaries including titles, authors, publication dates, and DOIs for research and academic content discovery.

  Last updated 2026-02-04

• pubmed-mcp-server

  cyanheads

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  A bridge connecting AI agents to NCBI's PubMed database through the Model Context Protocol, enabling seamless searching, retrieval, and analysis of biomedical literature and data.

  Last updated 2026-04-29

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• mcp-simple-pubmed

  andybrandt

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  An MCP server that provides access to PubMed articles through the Entrez API.

  Last updated 2026-03-19

  2

  165

  MIT

• mcp-server-markdown

  ofershap

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  MCP server for markdown files — search, extract sections, list headings, find code blocks across docs.

  Last updated 2026-03-10

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• mcp-markdown-vault

  wirux

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  Headless semantic MCP server for Obsidian, Logseq, Dendron, Foam, and any markdown folder. Features built-in hybrid semantic search, surgical AST editing, template scaffolding, zero-config local embeddings, and workflow tracking.

  Last updated 2026-04-15

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  2

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• Markdown MCP Server

  vishwajeetdabholkar

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  Extracts clean markdown content from web pages using Playwright, automatically filtering out navigation, headers, and ads while preserving formatting. Handles JavaScript-heavy sites and dynamic content, making web content easily readable and processable.

  Last updated 2025-10-05

  1

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• Markdown Downloader

  dazeb

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  An MCP server that enables users to download webpages as markdown files using r.jina.ai service, with features for configurable download directories and automatic date-stamped filenames.

  Last updated 2025-07-18

  5

  3

  52

  MIT

• PubMed MCP Server

  openpharma-org

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  Enables AI assistants to search and retrieve biomedical research articles from PubMed's database of over 35 million citations, including metadata, abstracts, MeSH terms, and full-text PDFs when available.

  Last updated 2025-12-22

  1

  MIT

• PubMed MCP Server

  Augmented-Nature

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  Provides comprehensive access to NCBI's PubMed database of over 36 million biomedical citations, allowing users to search, retrieve, and analyze literature directly through MCP tools. It supports advanced queries, citation management, full-text retrieval from PubMed Central, and precise discovery using MeSH terms.

  Last updated 2025-12-21

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• markdown-to-html

  fashionzzZ

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  A Model Context Protocol server that converts Markdown content to HTML format.

  Last updated 2025-06-03

  1

  2,101

  2

  MIT

• All-in-MCP

  isomoes

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  Enables academic research through paper search across multiple databases (IACR, CryptoBib, Crossref, Google Scholar), PDF processing, and GitHub repository browsing. Features modular architecture with FastMCP-based proxy server routing to specialized academic tools.

  Last updated 2026-02-07

  7

  2

  MIT

• mcp-markdown-tools

  rog0x

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  An MCP server that provides tools for analyzing, linting, formatting, and generating Markdown content. It enables users to programmatically manage Markdown files through features like table of contents generation, statistics calculation, and JSON-to-table conversion.

  Last updated 2026-03-21

  8

  MIT

• PubMed-MCP-Server

  JackKuo666

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  🔍 Enable AI assistants to search, access, and analyze PubMed articles through a simple MCP interface.

  Last updated 2025-05-08

  111

  MIT

• Markdown Frontmatter MCP

  caffeinatedwes

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  Enables querying Markdown files in knowledge bases (like Obsidian vaults) by front matter metadata, filtering notes by tags, recency, and folders to surface relevant content based on created/updated dates.

  Last updated 2025-12-12

  2

  MIT