Retrieve Gene Ontology annotations for a specific gene, including molecular function, biological process, and cellular component details from WormBase.
MIT
476,800 tools. Updated 2026-08-25 23:38
"A database for genomic and biological data (Ensembl)" matching MCP tools:
- Convert a gene symbol to its stable Ensembl ID (ENSG) for any species using taxonomy ID.Apache 2.0
- Fetch cross-database references for a plant locus from Ensembl Plants: UniProt, NCBI, TAIR, etc. Returns count and by-database rollup for identifier lookup. Supports Arabidopsis and other species.MIT
- Fetch database cross-references (PDB, Ensembl, RefSeq, etc.) for a UniProt accession. Optionally limit to specific databases; returns grouped references with short IDs or full IRIs.MIT
- Fetch a locus sequence from Ensembl Plants for genomic, CDS, cDNA, or protein. Defaults to Arabidopsis thaliana, supports other organisms, and returns sequence ready for BLAST.MIT
- Retrieve every curated external-database cross-reference for a UniProt accession, or filter to one database such as PDB, Pfam, Ensembl, or Reactome.Apache 2.0
Matching MCP Servers
- AlicenseNot gradedqualityCmaintenanceEnables querying Ensembl genomic data including gene lookup, sequence retrieval, homology, variation, and variant effect prediction via MCP tools.12MIT
- AlicenseAqualityDmaintenanceA Model Context Protocol server providing LLMs with access to the Ensembl genomics database, enabling AI assistants to query gene information, sequences, variants, and other genomic data across multiple species.108JavaScriptMIT
Matching MCP Connectors
Ensembl REST — vertebrate genomes, sequences, comparative genomics, variation
Look up genes, sequences, variants, homologs, and cross-database xrefs from Ensembl REST.
- Map a UniProtKB accession to primary external identifiers from databases like PDB, Ensembl, GeneID, and Pfam. Optionally restrict to specific databases for targeted cross-referencing.MIT
- Predict a variant's molecular consequences using Ensembl VEP. Provide a genomic region and alternate allele to receive the most severe effect and transcript-level annotations.MIT
- Retrieve germline variants (SNPs and indels) that overlap a specified gene locus, with variant IDs, source, consequences, and clinical significance, from Ensembl across 12 plant organisms.MIT
- Retrieve a CSV-formatted list of all available Biomart databases from Ensembl, including their display names and descriptions, to explore biological datasets and their attributes.MIT
- Query the FDA's MAUDE database to identify medical device issues, including malfunctions, patient injuries, and genomic/diagnostic device problems. Filter by device type, manufacturer, or problem description to uncover adverse event reports.MIT
- Run SPARQL queries against biological RDF databases like UniProt, ChEMBL, or PDB, returning results as CSV. Specify a database or endpoint for cross-database queries.MIT
- Generate genome-browser links and locus context for a gene or genomic interval. Specify a gene symbol or region, optional flanking base pairs, and assembly.MIT
- Get external database cross-references for a gene by symbol or HGNC ID, with optional filtering to NCBI, Ensembl, UniProt, RefSeq, OMIM, and more.MIT
- Retrieve plant genes or other features overlapping a specified genomic interval from Ensembl Plants. Use region, start, and end coordinates to identify features within a QTL or assembly window.MIT
- Retrieve your Oura user profile data such as age, weight, height, and biological sex. Access key personal metrics for health tracking.MIT
- Retrieve Ensembl server metadata, species information, data releases, and system status to access genomic database details and version tracking.JavaScriptMIT
- Retrieve comprehensive metadata for a biological sample or dataset by providing its unique identifier.BSD 3-Clause
- Look up alternate gene symbols and database cross-references for a target using its Ensembl ID to support identifier mapping and data integration.MIT
- Find samples, sequences, biodata, or taxa by specifying the entity type. Query biological and environmental data from multiple BER sources.BSD 3-Clause