Retrieve cross-database references (UniProt, NCBI Gene, TAIR, etc.) for a plant locus from Ensembl Plants. Returns count, raw list, and by-database rollup for fast identifier lookup.
MIT
213,223 tools. Last updated 2026-06-19 13:33
"A database for genomic and biological data (Ensembl)" matching MCP tools:
- Convert a gene symbol to its stable Ensembl ID (ENSG) for any species using taxonomy ID.Apache 2.0
- Fetch database cross-references (PDB, Ensembl, RefSeq, etc.) for a UniProt accession. Optionally limit to specific databases; returns grouped references with short IDs or full IRIs.MIT
- Map a UniProtKB accession to primary external identifiers from databases like PDB, Ensembl, GeneID, and Pfam. Optionally restrict to specific databases for targeted cross-referencing.MIT
- Retrieve a CSV-formatted list of all available Biomart databases from Ensembl, including their display names and descriptions, to explore biological datasets and their attributes.MIT
- Query the FDA's MAUDE database to identify medical device issues, including malfunctions, patient injuries, and genomic/diagnostic device problems. Filter by device type, manufacturer, or problem description to uncover adverse event reports.MIT
Matching MCP Servers
- FlicenseAqualityFmaintenanceA comprehensive Model Context Protocol (MCP) server that provides access to the Ensembl REST API for genomic data, comparative genomics, and biological annotations.Last updated193
- AlicenseAqualityDmaintenanceA Model Context Protocol server providing LLMs with access to the Ensembl genomics database, enabling AI assistants to query gene information, sequences, variants, and other genomic data across multiple species.Last updated108JavaScriptMIT
Matching MCP Connectors
Ensembl REST — vertebrate genomes, sequences, comparative genomics, variation
Look up genes, fetch sequences, predict variant consequences, find orthologs and xrefs via Ensembl.
- Analyze gene lists to identify overrepresented biological processes using Gene Ontology enrichment, helping interpret gene expression data and uncover functional implications.MIT
- Run SPARQL queries on single biological databases (e.g., UniProt, ChEMBL) or cross-database endpoints to retrieve integrated RDF data.MIT
- Convert biological identifiers between different database types like UniProt, PDB, Ensembl, GeneID, or Gene Name using a comma-separated list of IDs.Apache 2.0
- Retrieve Ensembl server metadata, species information, data releases, and system status to access genomic database details and version tracking.JavaScriptMIT
- Identify genomic features overlapping a specified region or feature in Ensembl, handling assembly variations and supporting multiple species and feature types.JavaScriptMIT
- Retrieve gene information using an Ensembl stable ID to access genomic data and details.ISC
- Retrieve gene information from the gnomAD database using Ensembl gene IDs or symbols to access genomic metadata and annotations.Apache 2.0
- Find chemical compounds tested against specific biological targets like genes or proteins, with activity data such as IC50 values from PubChem's database.
- Decompose a biological claim into structured components and retrieve relation-specific evidence from databases to verify its accuracy.MIT
- Search AllianceMine for genes, proteins, diseases, and biological entities across model organisms using keyword queries to find genomic data and associations.MIT
- Convert cDNA coordinates to genomic coordinates for transcript analysis using Ensembl data. Input transcript ID and cDNA region to get corresponding genomic location.ISC
- Convert coding sequence coordinates to genomic coordinates for Ensembl transcripts to locate gene regions in the genome.ISC
- Retrieve regulatory features like promoters and enhancers for a specified genomic region using Ensembl genomic data.ISC
- Find biological assays by target protein, gene name, description, or data source to access bioactivity data from PubChem's chemical database.MIT