Retrieve a structured overview of biological data categories, record counts, recent measurement dates, and completeness to scope data before fetching records. Requires active user consent.
Apache 2.0
649,985 tools. Updated 2026-10-11 16:28
"A database for genomic and biological data (Ensembl)" matching MCP tools:
- List BSP taxonomy categories with level details to identify biological data types relevant for health questions. Filter by CORE, STANDARD, EXTENDED, or DEVICE.Apache 2.0
- Retrieve Gene Ontology annotations for a specific gene, including molecular function, biological process, and cellular component details from WormBase.MIT
- Convert a gene symbol to its stable Ensembl ID (ENSG) for any species using taxonomy ID.Apache 2.0
- Retrieves source-attributed evidence for a genomic variant from ClinVar, gnomAD, Ensembl, or Atlas using HGVS, rsID, or VCF input; no clinical verdict.MIT
- Fetch cross-database references for a plant locus from Ensembl Plants: UniProt, NCBI, TAIR, etc. Returns count and by-database rollup for identifier lookup. Supports Arabidopsis and other species.MIT
Matching MCP Servers
- AlicenseNot gradedqualityBmaintenanceEnables querying Ensembl genomic data including gene lookup, sequence retrieval, homology, variation, and variant effect prediction via MCP tools.24 npmMIT
- AlicenseAqualityDmaintenanceA Model Context Protocol server providing LLMs with access to the Ensembl genomics database, enabling AI assistants to query gene information, sequences, variants, and other genomic data across multiple species.108JavaScriptMIT
Matching MCP Connectors
Ensembl REST MCP.
Look up genes, sequences, variants, homologs, and cross-database xrefs from Ensembl REST.
- Fetch database cross-references (PDB, Ensembl, RefSeq, etc.) for a UniProt accession. Optionally limit to specific databases; returns grouped references with short IDs or full IRIs.MIT
- Fetch a locus sequence from Ensembl Plants for genomic, CDS, cDNA, or protein. Defaults to Arabidopsis thaliana, supports other organisms, and returns sequence ready for BLAST.MIT
- List genes, transcripts, CDS, or exons overlapping a genomic interval in Ensembl Plants. Provide region, start, and end to map QTL intervals without per-locus lookup.MIT
- Retrieve every curated external-database cross-reference for a UniProt accession, or filter to one database such as PDB, Pfam, Ensembl, or Reactome.Apache 2.0
- Map a UniProtKB accession to primary external identifiers from databases like PDB, Ensembl, GeneID, and Pfam. Optionally restrict to specific databases for targeted cross-referencing.MIT
- List germline SNPs and indels overlapping a locus by resolving gene coordinates via Ensembl. Returns alleles, consequence class, clinical significance, and true variant count when truncated.MIT
- Retrieve a CSV-formatted list of all available Biomart databases from Ensembl, including their display names and descriptions, to explore biological datasets and their attributes.MIT
- Annotate a plant variant from an Ensembl region and alternate allele; returns primary molecular consequence, IMPACT, and SIFT scores per overlapping transcript.MIT
- Query the FDA's MAUDE database to identify medical device issues, including malfunctions, patient injuries, and genomic/diagnostic device problems. Filter by device type, manufacturer, or problem description to uncover adverse event reports.MIT
- Retrieve database metadata and associated data sources by providing a database ID.MIT
- Run SPARQL queries against biological RDF databases like UniProt, ChEMBL, or PDB, returning results as CSV. Specify a database or endpoint for cross-database queries.MIT
- Generate genome-browser links and locus context for a gene or genomic interval. Specify a gene symbol or region, optional flanking base pairs, and assembly.MIT
- Get external database cross-references for a gene by symbol or HGNC ID, with optional filtering to NCBI, Ensembl, UniProt, RefSeq, OMIM, and more.MIT
- Retrieve your Oura user profile data such as age, weight, height, and biological sex. Access key personal metrics for health tracking.MIT
- Retrieve Ensembl server metadata, species information, data releases, and system status to access genomic database details and version tracking.JavaScriptMIT