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Biomart MCP

by jzinno
GitHub
Python
MIT License
1
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list_marts

Retrieve a CSV-formatted list of all available marts (databases) from Ensembl via Biomart MCP, including display names and descriptions for querying biological datasets.

Instructions

Lists all available Biomart marts (databases) from Ensembl. Biomart organizes biological data in a hierarchy: MART -> DATASET -> ATTRIBUTES/FILTERS. This function returns all available marts as a CSV string. Returns: str: CSV-formatted table of all marts with their display names and descriptions. Example: list_marts() >>> "name,display_name,description ENSEMBL_MART_ENSEMBL,Ensembl Genes,Gene annotation from Ensembl ENSEMBL_MART_MOUSE,Mouse strains,Strain-specific data for mouse ..."

Input Schema

NameRequiredDescriptionDefault

No arguments

Input Schema (JSON Schema)

{ "properties": {}, "title": "list_martsArguments", "type": "object" }

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