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    Enables structured extraction of methods and reproducibility heuristics from academic papers, allowing AI agents to obtain metadata, full text, structured methods, code repository discovery, and a no-clone reproducibility verdict from a paper URL.
    8
    35 PyPI
    MIT
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    Provides MCP tool adapters for Bioconductor methods like limma, DESeq2, and fgsea, enabling statistical analysis of omics data through containerized R execution. It serves as a bridge between MCP clients and bioinformatics tools for reproducible research workflows.
    Apache 2.0
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    Recommends study designs for a research question, states the identifying assumptions to verify, and returns runnable R, Python, or Julia code with a formatted citation for every source, drawn from methodological textbooks, an R package, and research articles on causal inference, econometrics, statistics, and machine learning.
    6
    MIT
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    An MCP server that provides information about Utkarsh, including bio, skills, work experience, and portfolio projects, accessible via local stdio or remote HTTP with OAuth.
    6
    MIT
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    Enables AI models to ask users questions through a local web interface, supporting batch questions, multi-select, and free text for human-in-the-loop interactions.
    MIT
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    An MCP (Model Context Protocol) server that gives AI agents live, structured ad intelligence across Facebook, Google, and Instagram — data that no base model can produce from training alone. Powered by Apify actors. Works with any MCP-compatible client: Cursor, Claude, etc.
    11
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    Forces host coding agents through a structured multi-step reasoning protocol, scaffolding, validating, and formatting their thinking in QUICK, STANDARD, or DEEP modes, plus independent refutation and self-consistency verification passes. It runs entirely locally over stdio or Streamable HTTP using bash with no LLM, API key, GPU, or inference cost.
    6
    MIT
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    A sophisticated MCP server that provides a multi-dimensional, adaptive reasoning framework for AI assistants, replacing linear reasoning with a graph-based architecture for more nuanced cognitive processes.
    1
    53 npm
    33
    MIT
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    Enables any MCP client to surface twelve structured thinking frameworks for clarifying questions, learning, problem-solving, decision-making, and self-reflection, with fillable slash commands for humans and programmatic retrieval for agents.
    3
    MIT
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    Persistent sequential thinking for MCP clients, stored durably on Cloudflare Workers with support for branching, revision, and history retrieval.
    2
    MIT
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    Facilitates structured, progressive thinking through defined cognitive stages (Problem Definition, Research, Analysis, Synthesis, Conclusion), enabling users to break down complex problems, track thought progression, and generate summaries of their thinking process.
    MIT
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    Provides five rigorous reasoning protocols (debate, red team, audit_argument, threat_model, check_study) that run on the AI you're already using, requiring no extra API keys or costs.
    MIT
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    Structures debugging processes into a persistent knowledge graph, enabling problem decomposition, hypothesis testing, and reusable solution discovery.
    1
    17 npm
    4
    MIT
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    A structured, persistent reasoning workspace for AI. 20 tools for thought chains, branching, revision, search, tagging, and SQLite session persistence that survives context window resets and server restarts.
    20
    161 npm
    3
    MIT
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    A tool that implements Claude Shannon's problem-solving methodology to help break down complex problems into structured steps including problem definition, constraints, modeling, validation, and implementation.
    1
    64 npm
    72
    MIT
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    An MCP server that enables Claude to break down complex problems into manageable steps with support for revision and branching, facilitating dynamic and reflective problem-solving through a structured thinking process.
    1
    11 npm
    MIT
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    This is a MCP server that implements an unreasonable thinking system. It helps generate unconventional solutions: Generating unreasonable thoughts that challenge conventional wisdom. Creating branches of thinking in different directions
    3
    30
    MIT