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  • A
    license
    Not graded
    quality
    D
    maintenance
    Enables comprehensive biomedical literature research through PubMed database access with advanced search, full-text retrieval, citation analysis, and batch processing capabilities. Supports both local deployment and cloud hosting for seamless integration with AI assistants.
    1
    MIT
  • A
    license
    A
    quality
    C
    maintenance
    Enables LLM agents to search biomedical literature, retrieve article details, find related papers, manage caching, and download open-access full texts through MCP with structured, agent-friendly responses.
    5
    Apache 2.0
  • A
    license
    B
    quality
    C
    maintenance
    Provides comprehensive BioPython capabilities for biological sequence analysis, alignment, database access (GenBank, UniProt, PubMed), protein structure analysis, and phylogenetics through a Model Context Protocol interface for AI-assisted bioinformatics workflows.
    32
    3
    MIT
  • A
    license
    Not graded
    quality
    C
    maintenance
    Enables AI agents to resolve genes, diseases, chemicals, variants and species to normalized ids, search ~36M PubMed abstracts and PMC full texts by free text or entity, and retrieve the machine-extracted relations between them with the supporting sentences and PMIDs. Supports auditing individual relations with full evidence passages and pulling per-article entity annotations with character offsets.
    MIT
  • A
    license
    Not graded
    quality
    D
    maintenance
    Enables comprehensive academic research by searching and analyzing papers from PubMed, Google Scholar, ArXiv, and JSTOR. Provides full-text access, citation management, and research organization through five powerful consolidated tools.
    58 npm
    16
    MIT
  • A
    license
    Not graded
    quality
    B
    maintenance
    Enables querying HERB 2.0's Traditional Chinese Medicine knowledge base for herbs, ingredients, gene targets, diseases, PubMed-cited papers, and GEO transcriptomic experiments, with each relationship tagged by evidence tier.
    67 npm
    MIT
  • A
    license
    Not graded
    quality
    C
    maintenance
    Provides medical evidence tools including PubMed search, citation verification, clinical trial lookup, drug information, drug interaction checking, PICO extraction, and medical entity recognition via MCP.
    1
    MIT
  • A
    license
    Not graded
    quality
    D
    maintenance
    An MCP server with 60 tools connecting AI assistants to Czech healthcare databases (SUKL, MKN-10, NRPZS) and global biomedical sources (PubMed, ClinicalTrials.gov, OpenFDA).
    1
    MIT
  • A
    license
    Not graded
    quality
    B
    maintenance
    Enables AI agents to look up NLM Medical Subject Headings: search descriptors by disease, drug, or concept term, fetch a descriptor's preferred label, synonyms, qualifiers, and related headings, and resolve everyday free-text terms to their canonical MeSH heading for PubMed indexing. Runs keyless via a hosted gateway endpoint or as a local stdio server.
    68 npm
    MIT
  • A
    license
    Not graded
    quality
    D
    maintenance
    A specialized Model Context Protocol server that enhances AI-assisted medical learning by connecting Claude Desktop to PubMed, NCBI Bookshelf, and user documents for searching, retrieving, and analyzing medical education content.
    7
    MIT
  • A
    license
    Not graded
    quality
    B
    maintenance
    Enables clinical workflows including search and summarization of synthetic FHIR patient records, PubMed literature search, and HIPAA Safe Harbor de-identification of text, via any MCP client.
    MIT
  • A
    license
    Not graded
    quality
    B
    maintenance
    Enables AI agents to look up molecular interactions from the EBI IntAct database by gene/protein name or UniProt ID, returning detection method, interaction type, organism, PubMed reference, and MI confidence score, along with fast interaction counts. It is keyless and available either through a hosted MCP endpoint, a plain HTTP API, or a local stdio server.
    63 npm
    MIT
  • A
    license
    Not graded
    quality
    D
    maintenance
    Enables querying relationships between plant species, small molecules, and mitochondrial Complex I inhibitors by bridging natural-product, biodiversity, and PubMed datasets. Allows LLMs to perform structured searches and reasoning over biological data to identify potential plant-derived mitochondrial inhibitors.
    GPL 3.0
  • A
    license
    Not graded
    quality
    B
    maintenance
    Enables searching and retrieving expert-curated biochemical reactions from the Rhea database by compound name, ChEBI id, EC number, keyword, or Rhea id, returning balanced plain-text reaction equations alongside EC, ChEBI, UniProt, and PubMed cross-references.
    68 npm
    MIT