"A server for running bioinformatics tools" matching MCP servers:

Provides read-only, governance-audited operations for OLVM and oVirt 4.5 engines, enabling inventory, health, capacity, and diagnosis queries over MCP and CLI with audit logging and budget guards.

AI-powered MCP server for managing Proxmox VE VMs and containers with built-in governance, audit logging, and reversibility.

Provides Docker management tools for AI agents, including inspecting containers, images, Dockerfiles, and Compose configurations.

Enables AI assistants to manage Coolify infrastructure including servers, applications, databases, deployments, and 80+ one-click services through 98 comprehensive tools for both cloud and self-hosted instances.

MCP server that gives AI agents isolated, named Linux computers with stable IDs and lifecycle control. Supports multiple backends like Docker, Fly Machines, Modal, and E2B, with a dashboard for managing sandboxes.

A VMware ESXi/vCenter management server based on MCP (Machine Control Protocol), providing simple REST API interfaces for virtual machine management.

Governed XCP-ng operations via Xen Orchestra REST — VM-health, SR-usage, backup-failure, and patch-state RCA, with unbypassable audit logging (MCP + CLI), budget/runaway guards, dry-run, and undo/rollback.

AI-powered Veeam Backup & Replication operations MCP server with tools for managing jobs, restores, sessions, and repositories, featuring built-in governance, audit logging, and safety controls.

Governed Kubernetes operations for AI agents with 15 MCP tools, audit logging, policy engine, and safety features.

Governed AI-ops MCP server for Nutanix Prism Central v4 REST API, offering 47 read/write tools for clusters, VMs, storage, network, catalog, data protection, alerts, and LCM upgrades with built-in audit, budget, and risk-tier governance.

Governed Docker + Portainer container-host operations (non-Kubernetes) — restart-loop, resource-pressure, and image/volume-bloat RCA, with guarded lifecycle writes, unbypassable audit logging (MCP + CLI), budget/runaway guards, dry-run, and undo/rollback.

A Node.js application that provides a JSON-RPC interface to interact with CO2 sensor data, working in both simulation mode and with real Raspberry Pi Pico hardware connections.

Control and automate FlexSim simulations through AI assistants like Claude, enabling manufacturing and warehouse digital twin analysis, parameter studies, and real-time model manipulation via tools for opening models, running simulations, evaluating FlexScript, and exporting results.

Enables running arbitrary JavaScript code in isolated Docker containers with on-demand npm dependency installation, allowing for ephemeral script execution and long-running services with controlled resource limits.

MCP server for Cisco Modeling Labs (CML) that enables building, managing, and running network labs through MCP tools, wrapping the CML Python SDK for lab/topology CRUD, node/link management, and configuration.

MCP server that integrates with Coolify to let AI assistants manage Coolify instances via a clean toolkit wrapping the official REST API.

Enables an AI agent to see and control the screen of an already-running macOS virtual machine over VNC, exposing four tools: screenshot, click, type_text, and key_press. This lets the agent drive a disposable VM's UI directly with its own model, without touching the real desktop or running a separate agent loop.

Open-source MCP server for managing Hetzner Cloud infrastructure with two management layers: * Layer 1 — Hetzner Cloud API (35 tools): Server power control, metrics, snapshots, backups, firewalls, DNS zones and records, rescue mode, server rebuild and rescale. Works even when the server OS is unresponsive. * Layer 2 — SSH (25 tools): Service management (systemd), Nginx config and reload,

Enables running unknown binaries inside a maximum-hardening, no-network Docker sandbox with fixed containment, and inspecting the exact security boundary and past evidence records.

A Model Control Protocol server implementation that allows Claude Desktop to use Deepseek models running in Docker, enabling seamless integration between Claude Desktop and Deepseek's language models.

A Model Context Protocol (MCP) server for running Genesis World simulations with integrated visualization support, using stdio transport to enable local runtime visualization features.

Enables agent clients to safely connect to tools and execution resources through MCP with authorization, approvals, audit, chat-context isolation, SSH/Docker access, and long-running command session tracking.

A server tool for running Deep Learning models that offers Shell execution, Ngrok connectivity, and Docker container hosting with support for multiple AI frameworks including Anthropic, Gemini, and OpenAI.

Enables management of a UGREEN NAS running UGOS over SSH and SFTP, exposing 39 tools for system status, Docker containers/images/networks/compose, files and data transfer, backups, and network inspection. Every mutating action runs through a dry-run plan with a single-use confirmation token, so operations are reviewed before anything changes.

Enables agents to manage headless virtual machines and hypervisors, including listing VMs, inspecting VM details, managing snapshots, listing networks, reporting host information, and running sandboxed code through MCP tools.

Exposes Proxmox VE hosts as MCP tools for inventory, status, and VM/container management, running as a standalone Streamable HTTP service.

Enables managing VMs, running guest operations, transferring files, and controlling headless consoles via vmrun, REST, and VNC/RFB through 93 tools.

A secure Docker-based environment that allows AI assistants to safely execute code without direct access to the host system by running all code within isolated containers.

A free native MCP server for running, understanding, and debugging Linux containers on macOS using Apple's container tool, with audit trail and configurable safety modes.

Enables AI interactions with a running Minecraft server inside a Docker container using RCON, allowing models to programmatically create Minecraft builds and manage the server.