"A server for running bioinformatics tools" matching MCP servers:

Provides AI agents with real-time ground truth about what's actually running on the machine, including live agent sessions, listening TCP ports, loaded daemons, and system stats. It reads directly from the OS via fixed commands, ensuring agents never rely on stale docs or transcripts.

Provides agents with real Linux VMs to run commands, manage files, expose ports, and track costs, all through an ephemeral sandbox service.

A comprehensive MCP server with 30+ custom tools organized into categories: date/time operations, file management, system information, text processing, and web operations. Enables async communication with robust error handling and flexible CLI integration.

Provides advanced system monitoring and file search capabilities for macOS, allowing users to track performance metrics and perform enhanced file searches with content analysis and tagging features.

A small MCP server that wraps MoneyMoney on macOS via AppleScript, exporting account lists and transactions (bookingDate, amount, name, purpose) as plists for invoice reconciliation, complementing a companion Apple Mail server.

An MCP server that provides Claude with comprehensive desktop automation capabilities including browser control, window management, and native mouse/keyboard input on Windows. It enables users to capture screenshots, launch applications, and interact with the system clipboard through natural language.

A server that enables programmatic interaction with an already running Abaqus/CAE GUI application, allowing users to execute Python scripts and retrieve message logs through the Model Context Protocol (MCP).

Provides environment and configuration tools for AI agents, enabling parsing and generation of .env files, port checking, system information inspection, and dependency verification.

Enables AI agents and test runners to control Android devices via local ADB, including listing devices, tapping, swiping, typing, sending system keys, launching apps, and dumping UI hierarchy. Communicates over MCP stdio without exposing network listeners.

An MCP server that enables secure terminal command execution, directory navigation, and file system operations through a standardized interface for LLMs.

Provides read-only access to native macOS system utilities including disk management, battery status, network configuration, and system profiling through terminal commands. Enables users to retrieve system information and diagnostics from macOS machines via standardized MCP tools.

Provides seamless integration with macOS native applications including Messages, Notes, Contacts, Mail, Reminders, Calendar, and Maps, enabling natural language control and automation of Apple ecosystem apps.

Node.js server implementing Model Context Protocol that enables seamless interaction between Windows and Linux distributions under WSL, allowing file operations like reading, writing, searching, and managing files across the WSL filesystem from Windows.

Windows automation MCP offering * AI Vision (e.g. Click by Description) * Windows UI Automation Tree tools * Chrome Automation via Playwright * Mouse control * Keyboard control * a lot more (>40 tools) Also comes with Python/TypeScript/C# client libs and a Windows Desktop tool to try all the tools.

A modern, extensible server that provides a unified interface to control and interact with various macOS applications through plugins.

Enables agents to inspect ROS topics, processes, tmux sessions, and logs, and to perform operational actions such as sending tmux commands, restarting services, executing commands in containers, and running SSH remote commands.

MCP server for controlling the kitty terminal emulator. Exposes 40 tools for managing windows, tabs, layouts, text, appearance, and more.

MCP server for memory management with process inspection and cleanup tools.

AI-powered MCP server for TrueNAS SCALE storage operations with governance and safety features, enabling management of pools, datasets, snapshots, disks, alerts, and services.

Enables AI agents to securely connect to and manage remote servers via SSH, with tools for running commands, file operations, log inspection, service management, and system monitoring under configurable access controls and audit logging.