"A server for running bioinformatics tools" matching MCP servers:

An MCP server that provides utility tools for markdown processing, including ADF-to-markdown conversion, table formatting, and table of contents management.

An MCP server that provides developer knowledge and utility tools including local documentation search, text summarization, safe arithmetic calculation, unit conversion, and knowledge-base resources.

MCP server that exposes tools to route natural language queries to typed IDs, describe catalog entries, and list repository verification commands for the m-dev-tools organization.

Provides AI assistants with specialized tools to interact with NIST's Open Security Controls Assessment Language (OSCAL) framework. It enables agents to retrieve schemas, explore models, and generate valid OSCAL documentation for security compliance automation.

Automatically crawls documentation websites, converts them to organized markdown files, and generates condensed cheat sheets. Intelligently categorizes content into tools/APIs and provides local-first access to downloaded documentation.

MCP server providing parser-backed validation, parsing, documentation, and editor assistance for AI agents working with _hyperscript.

Enables inspecting local OpenAPI specification files by listing and retrieving spec details with filters and $ref resolution.

A Model Context Protocol (MCP) server designed to easily dump your codebase context into Large Language Models (LLMs).

An MCP server for managing pandoc/CSL-YAML bibliographies and verifying citations in documents.

Search and explore a catalog of 2,000+ MCP servers — full-text search, trending, hot, categories, and side-by-side comparison — from any MCP client. A zero-dependency stdio bridge over the hosted awesome-mcp.tools endpoint.

A comprehensive tool server for reading, merging, and extracting content from PDF files via local paths or direct URLs. It enables metadata retrieval, regex searching, and page-specific text extraction with built-in caching and workspace-restricted security.

A Swagger/OpenAPI query tool for MCP clients like Cursor, enabling AI assistants to browse, search, and retrieve detailed API type information.

An MCP server that enables users to read, search, and analyze PDF documents. It provides tools for extracting text, viewing metadata, searching content with context, and generating word statistics.

Enables querying documents through a Langflow backend using natural language questions, providing an interface to interact with Langflow document Q\&A flows.

Local, read-only MCP server that provides verified access to bounded.tools' signed static API, including the Web-Build Conformance report and SPDX SBOM, with byte-for-byte verification against a Sigstore-signed manifest.

Provides documentation generation and analysis tools for AI agents, including JSDoc generation, README analysis, changelog generation, API documentation, and code comment analysis.

A Python-based MCP server that enables document-based question answering by processing PDF, TXT, and Markdown files through OpenAI's API. It provides hallucination-free responses based strictly on document content using semantic search and includes a web interface for management.

An MCP server that provides tools for analyzing, linting, formatting, and generating Markdown content. It enables users to programmatically manage Markdown files through features like table of contents generation, statistics calculation, and JSON-to-table conversion.

lark-tools-mcp connects Lark and cursor. It provides cursor with the ability to read documents, send messages, process tasks, and perform data analysis.

pdf-tools-mcp