"Access GEO Biomedical Datasets" matching MCP servers:

An MCP server that gives AI agents access to configured databases (PostgreSQL, MySQL, Redshift, SQL Server) with SSH/AWS SSM tunnels, pluggable secret providers, and strict per-instance isolation.

Enables querying JSON/JSONL social datasets in Claude Desktop via MCP tools, using DuckDB as the backend database.

Enables AI assistants to query the Ubergraph biomedical ontology SPARQL endpoint with tools for custom SPARQL queries, term lookup, search, and hierarchy traversal.

An MCP server for the Hugging Face Dataset Viewer API that enables searching, fetching, and filtering datasets on the Hugging Face Hub. It allows users to explore schemas, perform full-text searches, and analyze dataset statistics through natural language.

Provides LLMs with structured access to critical biomedical databases including PubTator3 (PubMed/PMC), ClinicalTrials.gov, and MyVariant.info through the Model Context Protocol.

An MCP server that provides read-only access to MySQL databases.

Enables natural language interaction with a GeoServer instance for managing workspaces, datastores, feature types, layers, styles, and OGC services (WMS/WFS) via an LLM-powered agent.

Provides standardized access to aging and longevity research data from the OpenGenes database, enabling AI assistants to query comprehensive biomedical datasets through SQL and structured interfaces.

Enables interaction with the Hugging Face Dataset Viewer API, allowing users to browse, search, filter, and analyze datasets hosted on the Hugging Face Hub.

This read-only MCP Server allows you to connect to Access data from Claude Desktop through CData JDBC Drivers. For full CRUD support, check out our MCP Server for Access (https://www.cdata.com/drivers/access/download/mcp).

Enables full read-write access to PostgreSQL databases with transaction management and safety controls, allowing LLMs to query and modify database content.

MCP server platform enabling agents to self-register and access geo MCP tools (read-only geo_entities) plus hello ping services via a public MCP endpoint.

Enables natural language exploration and querying of Google BigQuery datasets through four tools: listing datasets, inspecting table schemas, generating SQL queries with LLM assistance, and executing approved queries.

Enables AI assistants to interact with Rockfish's machine learning platform through comprehensive API access. Supports managing databases, worker sets, workflows, models, projects, and datasets for ML operations.

Enables querying and exploring PhysioNet biomedical datasets via BigQuery, with tools to list accessible datasets, view schemas, inspect tables, and run SQL queries.

Enables AI to interact with Microsoft Access (.mdb, .accdb) and SQLite 3 databases, including read-only support for Access 97 databases. Supports executing SQL queries, importing/export data from CSV and Excel files, and storing notes about database files.

Executes SPARQL queries against biological and biomedical RDF databases from the RDF Portal, with additional REST API integrations for bioinformatics resources.

Enables AI interaction with Microsoft Access and SQLite databases to perform SQL queries, updates, and data management. It supports importing and exporting data via CSV and Excel files and includes tools for managing human-readable notes about database files.

A unified biomedical graph database that integrates 50+ primary data sources — genes, proteins, compounds, diseases, pathways, and clinical data — into a single queryable graph with billions of cross-reference edges. Its native MCP server gives LLMs direct access to structured, authoritative biomedical data, complementing their reasoning with reliable identifiers and up-to-date database content.

Provides Claude Desktop with secure access to multiple database connections, allowing users to query MySQL, PostgreSQL, SQLite, and SQL Server databases directly through natural language.