"Using llama.cpp and Searxng with local models" matching MCP servers:

MCP server that provides local, de-identified access to a demo EMR database using a private LLM for de-identification, ensuring raw patient data stays local.

Enables AI agents to query free biomedical and pharmaceutical APIs for clinical trials, drug data, molecular structures, adverse events, and research literature.

Provides oncology data (research, news, FDA approvals, clinical trials) and IBM MAMMAL biomedical predictions (PPI, DTI, ClinTox) as MCP tools. Allows AI agents to query cancer datasets and run predictions through a remote MCP server.

MyChart MCP Server

Search 200M+ patents and scientific literature in natural language using PatSnap's global R&D intelligence database.

An MCP server that provides mouse genetics data from Mouse Genome Informatics (MGI), enabling LLM agents to query markers, mutations, alleles, phenotypes, and disease models.

Enables querying a synthetic patient dataset with tools to look up patients by ID, age, disease, name, and get statistics, connecting Claude Desktop to local data.

Offline MCP server for ICD medical code lookup, search, and crosswalk translation with 124K codes and 102K mappings, all local with zero network calls.

Enables AI coding agents to search and retrieve official CryoSPARC documentation with version awareness, using a local prebuilt index for safe and fast access.

Enables read-only interaction with DHIS2 health data by searching indicators and querying compact analytics results, designed for small local models.

Enables variant annotation and effect prediction using the Ensembl VEP API, with support for batch and single queries.

Enables the generation, mutation, and evolution of DNA and protein sequences using various evolutionary models and phylogenetic algorithms. It supports realistic next-generation sequencing read simulation and population-level evolutionary tracking for bioinformatics research and testing.

Enables language models to query a clinical relational database through a small set of validated, row-capped tools, with evaluation of answerability and data leakage.

Enables wing simulation and aerodynamic analysis for pterosaur-inspired flight models. Provides lift, drag, and thrust calculations through the pterasim module with analytical fallbacks when the native module is unavailable.

Predicts CRISPR gene dependencies and drug targets by integrating literature, regulatory/PPI networks, and genome-scale metabolic models.

An MCP server that provides a toolbox for interacting with EPA SWMM stormwater models, enabling users to analyze model data and interpret results through LLM-driven tools. It assists stormwater modelers in understanding hydraulic systems and modeling behavior using natural language interfaces.

Enables querying US regulated-care providers (GLP-1 clinics) with tools for searching, retrieving details, and checking compliance, using natural language or function calls.

An MCP server that enables AI assistants to generate, score, and analyze DNA sequences using the evo2 genomic foundation model. It supports multiple execution modes including local GPU, SLURM clusters, and the Nvidia NIM cloud API for tasks like variant effect prediction and sequence embedding.

Enables molecular generation, optimization, and analysis through NVIDIA MolMIM API. Supports generating drug-like molecules with desired properties, extracting molecular embeddings, and exploring chemical space around seed molecules.

A local FastMCP server that enables searching and reviewing Turkish health and dental clinic promotional content against regulatory sources, with tools for source management and AI-assisted analysis.