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"Understanding Inference Models" matching MCP servers:

  • phylokit-mcp

    musharna
    A
    license
    A
    quality
    A
    maintenance
    Phylogenetic inference server driving IQ-TREE 2, always returning per-clade bootstrap support plus model selection, tree comparison, and alignment simulation, with detailed diagnostics like conflicting clades and model uncertainty.
    5
    GPL 2.0

  • mgi-link

    berntpopp
    A
    license
    A
    quality
    A
    maintenance
    An MCP server that provides mouse genetics data from Mouse Genome Informatics (MGI), enabling LLM agents to query markers, mutations, alleles, phenotypes, and disease models.
    13
    1
    MIT
  • Noctua MCP Server by geneontology

    Noctua MCP Serverofficial

    geneontology
    A
    license
    A
    quality
    C
    maintenance
    Enables editing and querying of Gene Ontology Causal Activity Models (GO-CAMs) through the Barista API. Supports model creation, individual and fact management, evidence addition, and causal pathway construction for biological knowledge representation.
    18
    BSD 3-Clause

  • nonmem-mcp-server

    sueinchoi
    A
    license
    A
    quality
    D
    maintenance
    An MCP server for NONMEM pharmacometric modeling that provides structured access to model parsing, execution, and results analysis. It enables users to perform diagnostics, manage PsN workflows, and translate models to mrgsolve for PK simulations through natural language.
    22
    15
    MIT

  • MCP Sequence Simulation Server

    coreymhudson
    A
    license
    A
    quality
    D
    maintenance
    Enables the generation, mutation, and evolution of DNA and protein sequences using various evolutionary models and phylogenetic algorithms. It supports realistic next-generation sequencing read simulation and population-level evolutionary tracking for bioinformatics research and testing.
    6
    BSD 2-Clause "Simplified"

  • fluxforge

    ali-kishk
    A
    license
    B
    quality
    B
    maintenance
    Predicts CRISPR gene dependencies and drug targets by integrating literature, regulatory/PPI networks, and genome-scale metabolic models.
    18
    Apache 2.0

  • SWMM-MCP

    kLabUM
    A
    license
    B
    quality
    D
    maintenance
    An MCP server that provides a toolbox for interacting with EPA SWMM stormwater models, enabling users to analyze model data and interpret results through LLM-driven tools. It assists stormwater modelers in understanding hydraulic systems and modeling behavior using natural language interfaces.
    18
    6
    MIT
  • SPOKEAgent by BaranziniLab

    SPOKEAgentofficial

    BaranziniLab
    A
    license
    Not graded
    quality
    A
    maintenance
    A structure-aware MCP server for querying the SPOKE biomedical knowledge graph, enabling entity resolution, schema introspection, path finding, and safe Cypher queries for biomedical knowledge inference.
    Apache 2.0

  • MedVision MCP

    u9401066
    A
    license
    Not graded
    quality
    D
    maintenance
    Provides AI-powered medical image analysis tools for LLM agents, enabling tasks such as X-ray classification, interactive segmentation, and visual question answering. It supports multi-step diagnostic reasoning and clinical workflows through a suite of specialized medical AI models.
    MIT

  • ParaView-MCP

    llnl
    A
    license
    Not graded
    quality
    F
    maintenance
    Integrates multimodal large language models with ParaView to enable the creation and manipulation of scientific visualizations using natural language and visual inputs. It features visual feedback capabilities for iterative refinement, making advanced visualization workflows accessible through intelligent automation.
    58
    BSD 3-Clause

  • NIH UMLS MCP Server

    feordin
    A
    license
    Not graded
    quality
    C
    maintenance
    An MCP server that provides access to the NIH UMLS API and the NIH VSAC FHIR API. This server enables AI models to search medical terminology, look up concept definitions, explore relationships between medical concepts, map codes between different medical coding systems, and work with curated clinical value sets.
    1
    MIT

  • Corrosion Engineering MCP

    puran-water
    A
    license
    Not graded
    quality
    F
    maintenance
    Provides AI agents with physics-based corrosion engineering calculations, from rapid handbook lookups to mechanistic electrochemical models with dual-tier pitting assessment for material compatibility screening and corrosion rate prediction.
    1
    MIT

  • chemdraw-mcp

    jurimaxam-dotcom
    A
    license
    Not graded
    quality
    A
    maintenance
    Enables generation of chemical structures, reactions, spectra, titration curves, 3D models, and more from natural language or SMILES, using RDKit for offline rendering and supporting formats like PNG, SVG, CDXML, and Anki decks.
    7
    Apache 2.0

  • Taiwan Health MCP Server

    annie25726
    A
    license
    Not graded
    quality
    D
    maintenance
    Integrates Taiwan-specific medical data including ICD-10 codes, FDA drug databases, and nutrition information into the Model Context Protocol. It enables AI models to query clinical guidelines, verify medical codes, and convert health data into FHIR R4 standardized formats.
    MIT

  • heracleum-tox-mcp-server

    chemagents
    A
    license
    Not graded
    quality
    B
    maintenance
    Reproduces the in-silico toxicological profile of Heracleum sosnowskyi metabolites from Rassabina & Fedorov (2025) using open-source models for LD50 prediction, toxicity classification, chemical space clustering, and synthesis cost estimation.
    MIT

  • decoupler-MCP

    scmcphub
    F
    license
    Not graded
    quality
    C
    maintenance
    Provides a natural language interface for single-cell RNA-Seq analysis using the decoupleR framework. It enables users to perform biological pathway inference, data clustering, and visualization through MCP-compatible AI clients.
    4