"Local AI Agent Toolkit" matching MCP servers:

MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

MCP server for headless care coordination, providing tools for case-aware provider search powered by ai-carematch.

Enables LLM agents to draw and edit ChemDraw reaction schemes, parse ELN exports and LCMS/NMR data, and generate publication-ready CDXML files through grounded chemistry tools.

A local-first MCP server for querying multi-omic personal health data (genome, labs, wearables) with an honesty contract and progressive disclosure skills.

Optometry AI Safety - MCP server providing AI-powered tools and automation by MEOK AI Labs

An open source biomedical research agent that provides LLMs with 28 tools for drug discovery, protein analysis, literature search, medical imaging, omics, and sandbox execution, all running locally via Ollama and MedGemma.

A hosted MCP server exposing US hospital chargemaster cost data to AI assistants.

Plug Sally AI into your agent. The clinical-grade health intelligence behind A1C Insights, Sally AI, now exposed as an MCP endpoint and REST API to your agent — 64+ biomarkers across Western clinical and TCM preventive frameworks. Authenticate, call the skills you need, get billed per request. Built for agents who care about health and evidence.

MCP server that provides local, de-identified access to a demo EMR database using a private LLM for de-identification, ensuring raw patient data stays local.

Enables secure natural language querying of a clinical SQL Server database using a local Ollama model, with strict SQL validation to protect sensitive data.

Role-based AI assistant for hospital workflows, patient FAQ, staff tools, and secure document approvals with MCP-style tool access.

Enables querying Brazilian PCDT clinical protocols from Conitec and generating concise, context-specific treatment summaries using a local LLM, with verified literal citations and links to official PDFs.

An MCP server implementing the ROBINS-I V2 framework for risk-of-bias assessment in non-randomized studies, with deterministic algorithms and full provenance. It enables users to parse study documents, specify target trial results, answer signalling questions with evidence-bound quotes, and compute or override domain judgements.

Enables querying and monitoring Brazilian Federal Council of Medicine resolutions on AI, telemedicine, and electronic medical records, with a local searchable copy and official document links.

MyChart MCP Server

Verified ICD-10-CM code lookup & validation for AI agents — official descriptions, not guesses.

TransBench is a translational research agent that takes free-text clinical observations, decomposes them into biological axes, generates falsifiable hypotheses grounded in PubMed evidence, and designs reproducible computational experiments with concrete datasets for Claude Science.

Monitors PubMed and medRxiv for configurable research topics, summarizes papers using a local LLM, and stores deduplicated results in a local database.

Provides interpretable variant effect predictions for 4.2 million ClinVar variants using the EVEE API. Enables searching, comparing, and analyzing genetic variants with AI-generated mechanistic interpretations and disruption profiles.

Privacy layer for healthcare AI agents. Pseudonymises patient identifiers (NHS numbers, names, dates of birth, addresses; UK and US) into labelled tokens locally before text reaches an agent, then restores the originals afterwards, keeping the token map out of agent context.