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maintenanceMCP server that provides local, de-identified access to a demo EMR database using a private LLM for de-identification, ensuring raw patient data stays local.
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"How to modify local files" matching MCP servers:
- MIT
- FlicenseAqualityDmaintenanceEnables querying a synthetic patient dataset with tools to look up patients by ID, age, disease, name, and get statistics, connecting Claude Desktop to local data.6
- AlicenseAqualityAmaintenanceProvides local DNA/RNA sequence analysis tools (composition, reverse complement, translation, ORF enumeration, motif scanning) via MCP for agent workflows.5MIT
- FlicenseAqualityCmaintenanceEnables AI coding agents to search and retrieve official CryoSPARC documentation with version awareness, using a local prebuilt index for safe and fast access.3
- FlicenseAqualityDmaintenanceA TypeScript MCP server for interacting with CDISC Define-XML 2.0 and 2.1 files, enabling users to load, search, and retrieve clinical data metadata including datasets, variables, and codelists. It supports local file processing with document caching and provides responses in both JSON and Markdown formats.13
- AlicenseAqualityDmaintenanceA high-performance MCP server that gives LLMs access to 25 biomedical tools federated across 50+ upstream APIs for genes, variants, drugs, diseases, literature, clinical trials, and structural biology.25672MIT
- AlicenseBqualityAmaintenanceLocal-first CGM MCP for AI agents: Dexcom Developer API and FreeStyle Libre via LibreLink Up.191541MIT
- AlicenseCqualityCmaintenanceEnables AI assistants to query ClinicalTrials.gov and PubMed for research evidence, and to compare regulatory document changes against internal files, with strict read-only access and no ability to modify or export data.5Apache 2.0
- AlicenseCqualityBmaintenanceEnables analysis of FTIR spectra by accepting peak lists, natural-language descriptions, or base64-encoded spectrum files and returning spectral-library candidates from the FTIR.fun API.4MIT
FHIRfly MCP Serverofficial
AlicenseNot gradedqualityBmaintenanceMCP server for connecting Claude Desktop to FHIRfly healthcare reference data APIs, enabling lookup of drugs, providers, clinical codes, and more.222MIT- AlicenseNot gradedqualityBmaintenanceAn MCP server for High-Throughput Screening (HTS) assay calculations across sub-cellular, cellular, tissue, and organism biological tiers, enabling local-first bioassay analysis.MIT
Bio-MCP FastQC Serverofficial
AlicenseNot gradedqualityDmaintenanceEnables AI assistants to perform quality control analysis on high-throughput sequencing data using FastQC and MultiQC. It supports single-file and batch processing of FASTQ/FASTA files and generates comprehensive, interactive summary reports.MIT
synapse-mcpofficial
AlicenseNot gradedqualityAmaintenanceA Model Context Protocol (MCP) server that enables AI agent access to Synapse entities such as Datasets, Projects, Folders, Files, Tables, and more.3MITbio-mcp-evo2official
AlicenseNot gradedqualityDmaintenanceAn MCP server that enables AI assistants to generate, score, and analyze DNA sequences using the evo2 genomic foundation model. It supports multiple execution modes including local GPU, SLURM clusters, and the Nvidia NIM cloud API for tasks like variant effect prediction and sequence embedding.MIT
galaxy-mcpofficial
AlicenseNot gradedqualityAmaintenanceMCP server for interacting with Galaxy bioinformatics platform, enabling AI assistants to connect to Galaxy instances, search and execute tools, manage workflows, and access other features.37MIT- AlicenseNot gradedqualityCmaintenanceEnables access to the IUPHAR/BPS Guide to PHARMACOLOGY database for querying drug targets, ligands, and pharmacological data without API keys.10MIT
- AlicenseNot gradedqualityCmaintenanceEnables AI agents to control RELION 5.x cryo-EM structure determination software through natural language, providing 23 tools for the complete single-particle analysis pipeline.4MIT
- AlicenseNot gradedqualityCmaintenanceMCP server for querying the GWAS Catalog (EBI/NHGRI), a curated catalog of genome-wide association studies. It enables AI agents to search and retrieve study data via natural language or direct tool calls.4MIT
- AlicenseNot gradedqualityCmaintenanceEnables querying and browsing ontologies from the EBI Ontology Lookup Service, including searching for terms, retrieving term details, and navigating ontology hierarchies via natural language.8MIT
