"How to get the file tree structure of a folder" matching MCP servers:

Integrates with Get Notes API to search and retrieve knowledge from configured knowledge bases with AI-powered synthesis and raw recall capabilities.

Searches UniProt by protein name to find accession numbers and retrieves detailed protein structure information from AlphaFold, including direct links to 3D structural predictions.

Enables AI agents to rank US healthcare organizations for clinical trial site feasibility, predicting patient accrual for a Graves' disease protocol using claims and registry data.

Enables natural-language querying of a mock legacy healthcare database and returns validated FHIR resources (Patient, Observation, Condition).

Enables AI assistants to read COVID-19 lateral flow test results from photographs by calling a deployed computer-vision pipeline, returning verdicts like positive or negative with confidence.

Enables LLM agents to query de-identified FHIR-shaped hospital data through audited, read-only tools for patients, encounters, conditions, observations, medications, and interaction checks, while any medication write stays a draft that a clinician must confirm out-of-band.

Enables genomic sequence analysis through the Evo 2 model, supporting DNA sequence scoring, embedding, generation, and variant effect prediction with multiple model checkpoints (7B, 40B, 1B parameters).

Enables LLM-based agents to interact with FHIR healthcare data through natural language prompts, providing full CRUD operations on FHIR resources, document processing, and semantic search capabilities.

Enables variant annotation and effect prediction using the Ensembl VEP API, with support for batch and single queries.

Enables searching, retrieving, and downloading protein structure data from the RCSB Protein Data Bank. Supports intelligent protein structure search, comprehensive data retrieval, and multiple file format downloads for bioinformatics research.

An open source biomedical research agent that provides LLMs with 28 tools for drug discovery, protein analysis, literature search, medical imaging, omics, and sandbox execution, all running locally via Ollama and MedGemma.

Provides secure access to VA's VistA electronic health record system, enabling AI applications to retrieve and summarize patient medical records for clinical staff.

Provides access to the AlphaFold Protein Structure Database with tools for structure retrieval, confidence analysis, batch processing, and visualization.

Explains why two scientific papers disagree. A contradiction explorer for bench scientists that compares two studies' designs and grounds every claim in a verbatim quote from the source text.

An MCP server that grounds protein research in the UniProt SPARQL endpoint, providing tools for querying proteins, sequences, variants, diseases, and more via intent-named tools and raw SPARQL.

Enables querying Brazilian PCDT clinical protocols from Conitec and generating concise, context-specific treatment summaries using a local LLM, with verified literal citations and links to official PDFs.

Enables semantic retrieval and assembly of ICD-10-CM value sets from natural language descriptions for clinical cohort definitions.

Connects Claude to the U.S. National Library of Medicine MeSH APIs to search and retrieve medical authority data, descriptors, and qualifiers. It enables library and metadata staff to perform subject analysis and confirm terminology within an AI-assisted cataloging workflow.

Enables language models to search biomedical literature, fetch sequences, and follow links across Entrez databases through eleven read-only tools wrapping the nine NCBI Entrez E-utilities. It handles URL building, pacing, redirects, response caps, and API-key redaction so queries can be answered without a browser or scraping.

A structure-aware MCP server for querying the SPOKE biomedical knowledge graph, enabling entity resolution, schema introspection, path finding, and safe Cypher queries for biomedical knowledge inference.