A
license-
qualityC
maintenanceEnables natural-language querying of a mock legacy healthcare database and returns validated FHIR resources (Patient, Observation, Condition).
MIT
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"How to connect a backend project to MongoDB" matching MCP servers:
- MIT
- Alicense-quality-maintenanceA production-grade MCP server that enables AI assistants to securely manage healthcare data through clinical tools for patient vitals, lab results, and medication ordering. It prioritizes security and compliance with features like HIPAA-ready audit logging, PII redaction, and role-based access control.
- AlicenseAqualityCmaintenanceEnables genomic sequence analysis through the Evo 2 model, supporting DNA sequence scoring, embedding, generation, and variant effect prediction with multiple model checkpoints (7B, 40B, 1B parameters).62LGPL 3.0
- AlicenseAqualityCmaintenanceEnables variant annotation and effect prediction using the Ensembl VEP API, with support for batch and single queries.91MIT
- Alicense-qualityDmaintenanceAn open source biomedical research agent that provides LLMs with 28 tools for drug discovery, protein analysis, literature search, medical imaging, omics, and sandbox execution, all running locally via Ollama and MedGemma.18MIT
- AlicenseAqualityAmaintenanceMCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments208526AGPL 3.0
- AlicenseAqualityCmaintenanceProvides safe read-only access to synthetic healthcare data via FHIR R4, enabling AI assistants to search patients, retrieve vitals, and summarize conditions using a public sandbox.490MIT
- AlicenseAqualityDmaintenanceBuilt by a healthcare IT engineer with 19 years of PACS/RIS/integration experience. Bridges DICOM, HL7v2, and FHIR — maps between standards, decodes vendor private tags (GE, Siemens, Philips), generates Mirth Connect channels, and explains integration patterns. 12 tools covering tag lookup, message parsing, cross-standard mapping, and channel generation.174MIT
- FlicenseAqualityDmaintenanceProvides access to EMBL-EBI bioinformatics data including InterPro domains, Pfam families, protein features, and taxonomy through a unified tool.11
- AlicenseAqualityAmaintenanceOpen-source guardrails between AI agents and FHIR clinical data — PHI redaction, immutable audit, step-up auth, tenant isolation. MCP server + OpenAI/Gemini adapters. A healthclaw.io project.2929MIT
- AlicenseAqualityDmaintenanceA Windows-based MCP server that exposes NIST's CONTAM simulation tools and ContamX bridge-mode controls to AI agents. It enables automated airflow and contaminant transport modeling, including project inspection, simulation execution, and real-time bridge session management.151MIT
- Alicense-qualityFmaintenanceProvides access to Allen Institute for Neural Dynamics (AIND) metadata and data assets through MongoDB queries, aggregation pipelines, NWB file exploration, and AI-powered data summaries.MIT
- Alicense-qualityDmaintenanceBridge any AI coding assistant directly to GenePattern — run bioinformatics modules, manage cloud jobs, and stream results, all through natural language.2BSD 3-Clause
synapse-mcpofficial
Alicense-qualityAmaintenanceA Model Context Protocol (MCP) server that enables AI agent access to Synapse entities such as Datasets, Projects, Folders, Files, Tables, and more.3MIT
snowstorm-mcp-serverofficial
Alicense-qualityBmaintenanceEnables AI assistants to look up, search, validate, navigate hierarchies, and expand value sets for SNOMED CT clinical terminology through the Model Context Protocol.7Apache 2.0
galaxy-mcpofficial
Alicense-qualityAmaintenanceMCP server for interacting with Galaxy bioinformatics platform, enabling AI assistants to connect to Galaxy instances, search and execute tools, manage workflows, and access other features.37MIT- Alicense-qualityCmaintenanceEnables interaction with FHIR resources on Google Cloud Healthcare API through a SmartOnFHIR gateway secured by Firebase Auth, providing access to patient data, medical records, and medical research tools like PubMed.1MIT
- Alicense-qualityCmaintenanceEnables AI agents to control RELION 5.x cryo-EM structure determination software through natural language, providing 23 tools for the complete single-particle analysis pipeline.4MIT
- Alicense-qualityDmaintenanceEnables MCP clients like Claude Desktop to interact with openEHR REST APIs (EHRbase) for creating compositions, managing EHRs, listing templates, and executing AQL queries.18MIT
