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  • Oh My KEGG MCP

    martinuslee
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    An MCP server that provides access to the Kyoto Encyclopedia of Genes and Genomes (KEGG) database, offering 30 tools for searching and analyzing biological data like pathways, genes, and compounds. It supports integration with LangChain and Ollama to enable LLMs to interact with comprehensive genomic and chemical datasets.
    Last updated
    8
    MIT

  • MeSH MCP

    msuicaut
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    Connects Claude to the U.S. National Library of Medicine MeSH APIs to search and retrieve medical authority data, descriptors, and qualifiers. It enables library and metadata staff to perform subject analysis and confirm terminology within an AI-assisted cataloging workflow.
    Last updated
    4
    1
    GPL 3.0

  • mcp-pubmed

    benoitleq
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    An MCP server that provides direct access to PubMed and PubMed Central via the NCBI E-utilities API. It enables AI models to search biomedical literature, retrieve detailed article metadata, and download open-access full texts.
    Last updated
    5
    MIT

  • clinicaltrials-mcp

    agents100x
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    Enables conversational access to 400,000+ clinical trials on ClinicalTrials.gov, allowing users to search, compare, and retrieve trial details using plain English through MCP-compatible clients like Cursor and Claude Desktop.
    Last updated
    5
    3
    MIT
  • PDBe MCP Servers by PDBeurope

    PDBe MCP Serversofficial

    PDBeurope
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    Provides seamless access to the Protein Data Bank in Europe (PDBe) API and search capabilities, enabling AI clients to query protein structures, perform advanced searches, and retrieve structural biology data.
    Last updated
    33
    36
    Apache 2.0

  • DICOM/HL7/FHIR

    NyxToolsDev
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    Built by a healthcare IT engineer with 19 years of PACS/RIS/integration experience. Bridges DICOM, HL7v2, and FHIR — maps between standards, decodes vendor private tags (GE, Siemens, Philips), generates Mirth Connect channels, and explains integration patterns. 12 tools covering tag lookup, message parsing, cross-standard mapping, and channel generation.
    Last updated
    17
    4
    MIT

  • cdisc-mcp

    Teninq
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    Exposes CDISC standards data including SDTM, ADaM, CDASH, and Controlled Terminology as tools for AI assistants via the CDISC Library API. It enables users to search standards, retrieve domain variables, and access codelist definitions to facilitate clinical research data management.
    Last updated
    12
    1
    MIT

  • openemr-mcp

    shruti-jn
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    An MCP server that connects AI assistants to OpenEMR instances to manage patient records, clinical trends, and medication safety. It provides 17 tools for tasks such as patient search, drug interaction checks, and generating comprehensive health trajectories and visit preparations.
    Last updated
    17
    MIT

  • mcp-pubmed

    PetrefiedThunder
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    An MCP server that provides access to PubMed and NCBI's biomedical literature database for searching articles, retrieving metadata, and tracking citations. It enables users to explore related research, browse MeSH vocabulary, and find free full-text links.
    Last updated
    6
    MIT

  • nonmem-mcp-server

    sueinchoi
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    An MCP server for NONMEM pharmacometric modeling that provides structured access to model parsing, execution, and results analysis. It enables users to perform diagnostics, manage PsN workflows, and translate models to mrgsolve for PK simulations through natural language.
    Last updated
    22
    15
    MIT

  • STRING MCP Server

    munch-group
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    Provides access to the STRING protein-protein interaction database for mapping identifiers, retrieving interaction networks, and performing functional enrichment analysis. It enables users to explore protein partners, pathways, and cross-species homology through natural language interactions.
    Last updated
    9
    1
    ISC

  • gnomAD MCP Server

    koido
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    Provides a programmatic interface to the Genome Aggregation Database (gnomAD) API across versions v2.1.1, v3.1.2, and v4.1.0. It enables users to query gene metadata, variant information, population frequencies, and ClinVar data through a unified schema.
    Last updated
    12
    5
    Apache 2.0