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"Connecting to and Running Queries on Local and Remote Databases" matching MCP servers:

  • sharp-on-fhir-mcp

    TerminallyLazy
    A
    license
    -
    quality
    C
    maintenance
    A clean-room SHARP-on-MCP compliant FHIR R4 MCP server that enables AI agents to interact with any FHIR R4 endpoint using SHARP context headers, without server-side OAuth. It provides clinical tools, lab results, imaging, and interactive MCP-UI dashboards.
    MIT

  • PubMed MCP Server

    aglitch120
    A
    license
    -
    quality
    D
    maintenance
    Enables comprehensive biomedical literature research through PubMed database access with advanced search, full-text retrieval, citation analysis, and batch processing capabilities. Supports both local deployment and cloud hosting for seamless integration with AI assistants.
    1
    MIT

  • CzechMedMCP

    petrsovadina
    A
    license
    -
    quality
    D
    maintenance
    An MCP server with 60 tools connecting AI assistants to Czech healthcare databases (SUKL, MKN-10, NRPZS) and global biomedical sources (PubMed, ClinicalTrials.gov, OpenFDA).
    1
    MIT

  • pgx-mcp

    Julius-Schmidt
    A
    license
    -
    quality
    D
    maintenance
    Enables real-time pharmacogenomics analysis, including variant clinical significance, drug-gene interactions, and dosing guidelines, by connecting to ClinVar, PharmGKB, gnomAD, and other databases.
    1
    MIT

  • OpenEHR MCP Server

    ajinkyasabale-github
    -
    license
    -
    quality
    -
    maintenance
    Enables LLMs to interact with OpenEHR electronic health record systems by retrieving clinical archetypes, generating AQL queries from natural language, and executing queries against on-premise EHR databases. Supports OpenEHR Clinical Knowledge Manager integration and custom IIS-hosted EHR APIs for comprehensive medical data access.

  • searchloinc

    jesse-smith
    A
    license
    A
    quality
    B
    maintenance
    Enables LLMs to search LOINC terms with free-text, relevance-ranked, and faceted queries via the LOINC Search API, mirroring the loinc.org/search experience.
    5
    MIT

  • Gigwa-MCP

    gkanogiannis
    A
    license
    A
    quality
    A
    maintenance
    An MCP server that interfaces with Gigwa for genotyping data import, analysis, and audit, enabling users to perform complex workflows through natural language commands.
    29
    Apache 2.0

  • Rosetta MCP Server

    Arielbs
    A
    license
    A
    quality
    F
    maintenance
    An MCP server that enables AI coding assistants to interact with Rosetta, PyRosetta, and Biotite for running RosettaScripts, validating XML, translating between Rosetta and Biotite, scoring structures, and querying documentation.
    19
    112
    18
    MIT

  • clinicaltrials-mcp

    agents100x
    A
    license
    A
    quality
    D
    maintenance
    Enables conversational access to 400,000+ clinical trials on ClinicalTrials.gov, allowing users to search, compare, and retrieve trial details using plain English through MCP-compatible clients like Cursor and Claude Desktop.
    5
    3
    MIT

  • TogoMCP

    dbcls
    A
    license
    A
    quality
    A
    maintenance
    An MCP server that gives AI assistants access to biological and biomedical RDF databases via SPARQL at the RDF Portal, as well as selected REST APIs (NCBI E-utilities, UniProt, ChEMBL, PDB, Reactome, Rhea, MeSH, and more).
    29
    11
    MIT

  • mnova-mcp

    cyx1874cyx
    A
    license
    A
    quality
    C
    maintenance
    MCP server for MestReNova 15 that enables processing 1D NMR data, importing ChemDraw structures, running Mnova Verify, and writing back assignments with audit trails.
    4
    1
    MIT
  • openpgx by open-pgx

    openpgxofficial

    open-pgx
    A
    license
    A
    quality
    D
    maintenance
    Enables AI-driven pharmacogenomic analysis by querying structured genetic variant, drug response, and disease risk data. Supports natural language questions about medications, traits, and health risks based on user genome data, with privacy-first local execution.
    16
    455
    11
    MIT

  • openfda-mcp-server

    ek-nath
    A
    license
    A
    quality
    D
    maintenance
    Enables LLMs to search FDA drug labels and adverse event data via the OpenFDA API, supporting natural language queries for drug safety information.
    2
    MIT