"MCP servers for retrieving system information" matching MCP servers:

• 

  PDBe MCP Serversofficial

  PDBeurope

  A

  license

  A

  quality

  A

  maintenance

  Provides seamless access to the Protein Data Bank in Europe (PDBe) API and search capabilities, enabling AI clients to query protein structures, perform advanced searches, and retrieve structural biology data.

  Last updated 2026-07-16

  33

  36

  Apache 2.0

• Math-Physics-ML MCP System

  andylbrummer

  A

  license

  -

  quality

  B

  maintenance

  Provides GPU-accelerated scientific computing capabilities including symbolic mathematics, quantum wave mechanics simulations, molecular dynamics, and neural network training through four specialized MCP servers.

  Last updated 2026-05-01

  2

  MIT

• MCP Server for Cirro Data

  NorahZager

  -

  license

  -

  quality

  -

  maintenance

  This server enables multi-agent conversations for interacting with Cirro's biological data platform through its OpenAPI interface, auto-generated using AG2's MCP builder.

  Last updated 2025-06-03
• 

  Bio-MCP BLASTofficial

  bio-mcp

  A

  license

  -

  quality

  D

  maintenance

  Enables AI assistants to perform NCBI BLAST sequence similarity searches through natural language, supporting nucleotide and protein searches, custom database creation, and multiple output formats.

  Last updated 2025-06-29

  9

  MIT
• 

  bio-mcp-evo2official

  bio-mcp

  A

  license

  -

  quality

  D

  maintenance

  An MCP server that enables AI assistants to generate, score, and analyze DNA sequences using the evo2 genomic foundation model. It supports multiple execution modes including local GPU, SLURM clusters, and the Nvidia NIM cloud API for tasks like variant effect prediction and sequence embedding.

  Last updated 2025-07-10

  MIT

• BWA MCP Server

  bio-mcp

  A

  license

  -

  quality

  D

  maintenance

  Enables AI assistants to perform DNA/RNA sequence alignment using BWA (Burrows-Wheeler Aligner), supporting both short and long read alignment to reference genomes with indexing, BWA-MEM, and BWA-backtrack algorithms.

  Last updated 2025-07-10

  MIT

• clinicaltrialsgov-mcp-server

  cyanheads

  A

  license

  A

  quality

  A

  maintenance

  Empowers AI agents with direct access to the official ClinicalTrials.gov database, enabling programmatic searching, retrieval, and analysis of clinical study data through a Model Context Protocol interface.

  Last updated 2026-07-09

  7

  1,393

  81

  Apache 2.0

• Gen3 MCP Server

  delocalizer

  A

  license

  A

  quality

  D

  maintenance

  A Model Context Protocol (MCP) server for interacting with Gen3 data commons, with GraphQL query validation to reduce hallucinations.

  Last updated 2025-06-13

  5

  4

  MIT

• pubchem-mcp-server

  cyanheads

  A

  license

  A

  quality

  A

  maintenance

  Enables AI agents and applications to search, retrieve, and analyze chemical compounds, substances, and bioassays from PubChem's vast chemical information database through comprehensive tools for chemical research and discovery.

  Last updated 2026-07-03

  10

  944

  9

  Apache 2.0

• uniprot-mcp

  fzlzjerry

  A

  license

  A

  quality

  B

  maintenance

  MCP server that exposes the UniProt REST API to LLM clients, enabling search and retrieval of protein data via tools like search_uniprotkb, get_entry, and map_ids.

  Last updated 2026-06-14

  7

  MIT

• Gigwa-MCP

  gkanogiannis

  A

  license

  A

  quality

  A

  maintenance

  An MCP server that interfaces with Gigwa for genotyping data import, analysis, and audit, enabling users to perform complex workflows through natural language commands.

  Last updated 2026-07-09

  42

  29

  Apache 2.0

• WetLab-MCP

  muslus

  A

  license

  A

  quality

  D

  maintenance

  Enables AI-assisted molecular biology experiment design with tools for qPCR primer design, cloning strategy optimization, TaqMan probe design, and multiplex compatibility analysis.

  Last updated 2026-04-08

  6

  1

  MIT

• just-prs-mcp

  dna-seq

  A

  license

  A

  quality

  B

  maintenance

  MCP server for polygenic risk score analysis, wrapping just-prs to enable catalog search, PRS computation, VCF normalization, percentile and risk estimation, and quality assessment.

  Last updated 2026-07-23

  16

  1

  MIT

• Rosetta MCP Server

  Arielbs

  A

  license

  A

  quality

  F

  maintenance

  An MCP server that enables AI coding assistants to interact with Rosetta, PyRosetta, and Biotite for running RosettaScripts, validating XML, translating between Rosetta and Biotite, scoring structures, and querying documentation.

  Last updated 2026-04-05

  19

  238

  16

  MIT

• uniprot-mcp

  smaniches

  A

  license

  A

  quality

  A

  maintenance

  Auditable UniProt MCP server with per-query SHA-256 provenance and offline replay

  Last updated 2026-07-13

  41

  3

  Apache 2.0

• uniprot-unipressed-mcp

  pansapiens

  A

  license

  A

  quality

  D

  maintenance

  An MCP server that provides tools for searching and fetching protein data from the UniProt database using the unipressed library.

  Last updated 2026-01-21

  2

  MIT
• 

  BioContextAI Knowledgebase MCPofficial

  biocontext-ai

  A

  license

  A

  quality

  C

  maintenance

  An MCP server that provides standardized access to biomedical knowledge bases and resources, enabling AI systems to retrieve verified information from sources like bioRxiv, EuropePMC, and various protein/gene databases.

  Last updated 2026-01-12

  52

  28

  Apache 2.0

• lineageverse-mcp

  colganwi

  A

  license

  A

  quality

  C

  maintenance

  MCP server for single-cell lineage tracing analysis, enabling conversational reconstruction, visualization, and heritability analysis of lineage trees using Cassiopeia, pycea, and treedata.

  Last updated 2026-07-15

  18

  MIT
• 

  WormBase MCP Serverofficial

  WormBase

  A

  license

  A

  quality

  D

  maintenance

  Enables querying the WormBase database for C. elegans and nematode genomics data, including gene information, protein sequences, phenotypes, interactions, and expression patterns through natural language.

  Last updated 2025-12-12

  12

  1

  MIT

• biothings-mcp

  longevity-genie

  A

  license

  A

  quality

  F

  maintenance

  Provides a Model Context Protocol server for accessing and querying biomedical data from BioThings services, including gene, variant, chemical, and taxon annotations.

  Last updated 2025-11-03

  19

  33

  MIT