A
license-
qualityD
maintenanceExposes pipen bioinformatics pipelines as MCP tools, allowing AI assistants to discover and run complex workflows through a progressive disclosure interface.
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"Enhancing and redesigning application user interface" matching MCP servers:
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CEDAR MCP Serverofficial
Alicense-qualityCmaintenanceEnables interaction with the CEDAR metadata repository, including fetching templates, searching BioPortal ontology terms, and managing template instances.Last updatedMIT- Alicense-qualityDmaintenanceBridge any AI coding assistant directly to GenePattern — run bioinformatics modules, manage cloud jobs, and stream results, all through natural language.Last updated1BSD 3-Clause
reactome-mcpofficial
Alicense-qualityFmaintenanceEnables AI assistants to search, browse, analyze, and export biological pathway data from Reactome through natural language.Last updated5Apache 2.0
galaxy-mcpofficial
Alicense-qualityCmaintenanceMCP server for interacting with Galaxy bioinformatics platform, enabling AI assistants to connect to Galaxy instances, search and execute tools, manage workflows, and access other features.Last updated36MIT- Alicense-qualityCmaintenanceEnables querying the gnomAD genome aggregation database for variant, gene, and region information.Last updated15MIT
