"A search engine called Brave Search" matching MCP servers:

• paper-search-mcp

  upascal

  F

  license

  -

  quality

  C

  maintenance

  Enables searching for academic papers and preprints across multiple platforms including Semantic Scholar, arXiv, PubMed, and CrossRef. It provides access to research records, DOI lookups, and journal metadata through a unified interface deployed on Cloudflare Workers.

  Updated 5 months ago (2026-03-13 19:44 UTC)

• MCP PubMed Search

  wavelovey

  A

  license

  B

  quality

  D

  maintenance

  Server to search PubMed (PubMed is a free, online database that allows users to search for biomedical and life sciences literature). I have created on a day MCP came out but was on vacation, I saw someone post similar server in your DB, but figured to post mine.

  Updated 2 years ago (2024-12-12 13:53 UTC)

  1

  47

  MIT

• PubMed Enhanced Search

  leescot

  F

  license

  -

  quality

  D

  maintenance

  Enables search and retrieval of academic papers from PubMed database with advanced features like MeSH term lookup, publication statistics, and PICO-based evidence search.

  Updated a year ago (2025-03-22 07:26 UTC)

  5

• Evo2 MCP Server

  not-a-feature

  A

  license

  A

  quality

  C

  maintenance

  Enables genomic sequence analysis through the Evo 2 model, supporting DNA sequence scoring, embedding, generation, and variant effect prediction with multiple model checkpoints (7B, 40B, 1B parameters).

  Updated 4 months ago (2026-04-13 12:36 UTC)

  6

  2

  LGPL 3.0

• VEPmcp

  not-a-feature

  A

  license

  A

  quality

  C

  maintenance

  Enables variant annotation and effect prediction using the Ensembl VEP API, with support for batch and single queries.

  Updated a year ago (2025-08-18 11:44 UTC)

  9

  1

  MIT

• mcp-server-bioscience

  wangshuaifbj-collab

  F

  license

  A

  quality

  B

  maintenance

  Biological and medical data search MCP server.

  Updated 2 days ago (2026-08-13 08:56 UTC)

  4

  32
• 

  seosiri-bioroboticsofficial

  SEOSiri-Official

  A

  license

  A

  quality

  A

  maintenance

  A stateless, deterministic Bio-Robotics Core Engine converting biological data (UniProt API) to G-code.

  Updated 19 days ago (2026-07-27 12:04 UTC)

  4

  6

  MIT

• pubmed-mcp-server

  AIAnytime

  A

  license

  B

  quality

  D

  maintenance

  Search PubMed for articles matching the query.

  Updated 3 days ago (2026-08-12 20:21 UTC)

  1

  67

  MIT

• mcp-gwas-catalog

  pipeworx-io

  A

  license

  -

  quality

  C

  maintenance

  MCP server for querying the GWAS Catalog (EBI/NHGRI), a curated catalog of genome-wide association studies. It enables AI agents to search and retrieve study data via natural language or direct tool calls.

  Updated 11 days ago (2026-08-04 06:41 UTC)

  4

  MIT

• PubMed-MCP-Server

  JackKuo666

  A

  license

  -

  quality

  F

  maintenance

  🔍 Enable AI assistants to search, access, and analyze PubMed articles through a simple MCP interface.

  Updated a year ago (2025-05-08 12:45 UTC)

  124

  MIT

• genefoundry

  berntpopp

  A

  license

  -

  quality

  A

  maintenance

  Federates 13 gene-related MCP backends (gnomAD, GTEx, etc.) behind a single Streamable HTTP endpoint with collision-free namespacing and search-based tool discovery.

  Updated 5 days ago (2026-08-10 14:58 UTC)

  2

  MIT

• protein-mcp-server

  cyanheads

  A

  license

  -

  quality

  A

  maintenance

  A Model Context Protocol server providing programmatic access to 3D protein structural data from RCSB PDB, PDBe, and UniProt, enabling search, retrieval, comparison, and analysis of protein structures.

  Updated 16 days ago (2026-07-30 18:07 UTC)

  128

  5

  Apache 2.0

• @cyanheads/brapi-mcp-server

  cyanheads

  A

  license

  -

  quality

  A

  maintenance

  A collaborative BrAPI v2.1 workspace for multi-agent research via MCP, enabling search and retrieval of studies, germplasm, genotypes, and more across any BrAPI v2-compliant server.

  Updated a month ago (2026-07-16 20:41 UTC)

  340

  3

  Apache 2.0

• VFB3-MCP

  Robbie1977

  A

  license

  -

  quality

  C

  maintenance

  Enables AI assistants to query VirtualFlyBrain data, run queries, and search for terms related to Drosophila neurobiology.

  Updated 6 months ago (2026-02-07 06:25 UTC)

  MIT

• mcp-uniprot

  pipeworx-io

  A

  license

  -

  quality

  C

  maintenance

  Provides access to UniProt protein sequence and function knowledge base, enabling search and retrieval of protein entries, proteomes, taxonomy, and feature annotations.

  Updated 11 days ago (2026-08-04 07:27 UTC)

  7

  MIT

• mcp-bioregistry

  pipeworx-io

  A

  license

  -

  quality

  C

  maintenance

  Provides tools to query and resolve identifiers from the Bioregistry, including prefix metadata, CURIE resolution, and substring search.

  Updated 11 days ago (2026-08-04 06:20 UTC)

  9

  MIT

• Redis Graph MCP Server

  yskale

  F

  license

  -

  quality

  D

  maintenance

  Enables LLMs and AI agents to query a biomedical knowledge graph stored in RedisGraph, with tools for concept search, synonym enrichment, and study variable discovery through semantic relationships.

  Updated 3 months ago (2026-05-19 16:09 UTC)

• bioRxiv-MCP-Server

  JackKuo666

  F

  license

  -

  quality

  F

  maintenance

  🔍 Enable AI assistants to search and access bioRxiv papers through a simple MCP interface. The bioRxiv MCP Server provides a bridge between AI assistants and bioRxiv's preprint repository through the Model Context Protocol (MCP). It allows AI models to search for biology preprints and access their

  Updated a year ago (2025-03-18 13:21 UTC)

  24

• clinicaltrialsgov-mcp-server

  cyanheads

  A

  license

  A

  quality

  B

  maintenance

  Empowers AI agents with direct access to the official ClinicalTrials.gov database, enabling programmatic searching, retrieval, and analysis of clinical study data through a Model Context Protocol interface.

  Updated 20 days ago (2026-07-26 14:09 UTC)

  7

  1,149

  87

  Apache 2.0

• Biomolecule Modeling MCP

  huangjianhuster

  F

  license

  A

  quality

  D

  maintenance

  Enables AI assistants to clean PDB structures and run initial-stage energy relaxation for biomolecular modeling. It provides a structured workflow for preparing structures before production molecular dynamics or coarse-graining pipelines.

  Updated 4 months ago (2026-04-21 01:55 UTC)

  9