"A local server for Fetch MCP functionality" matching MCP servers:

• Evo2 MCP Server

  not-a-feature

  A

  license

  -

  quality

  C

  maintenance

  Enables genomic sequence analysis through the Evo 2 model, supporting DNA sequence scoring, embedding, generation, and variant effect prediction with multiple model checkpoints (7B, 40B, 1B parameters).

  Last updated 2026-04-13

  2

  LGPL 3.0

• MCP Server for Cirro Data

  NorahZager

  -

  license

  -

  quality

  -

  maintenance

  This server enables multi-agent conversations for interacting with Cirro's biological data platform through its OpenAPI interface, auto-generated using AG2's MCP builder.

  Last updated 2025-06-03

• pubchem-mcp-server

  cyanheads

  A

  license

  A

  quality

  A

  maintenance

  Enables AI agents and applications to search, retrieve, and analyze chemical compounds, substances, and bioassays from PubChem's vast chemical information database through comprehensive tools for chemical research and discovery.

  Last updated 2026-07-28

  10

  1,020

  9

  Apache 2.0

• pubmed-mcp-server

  cyanheads

  A

  license

  A

  quality

  A

  maintenance

  A bridge connecting AI agents to NCBI's PubMed database through the Model Context Protocol, enabling seamless searching, retrieval, and analysis of biomedical literature and data.

  Last updated 2026-07-26

  11

  4,246

  128

  Apache 2.0

• VEPmcp

  not-a-feature

  A

  license

  A

  quality

  C

  maintenance

  Enables variant annotation and effect prediction using the Ensembl VEP API, with support for batch and single queries.

  Last updated 2025-08-18

  9

  1

  MIT

• BioOntology MCP Server

  Augmented-Nature

  F

  license

  B

  quality

  D

  maintenance

  A production-ready Model Context Protocol (MCP) server that provides comprehensive access to the BioOntology API for searching, annotating, and exploring over 1,200 biological ontologies.

  Last updated 2025-12-21

  10

  9

• BWA MCP Server

  bio-mcp

  A

  license

  -

  quality

  D

  maintenance

  Enables AI assistants to perform DNA/RNA sequence alignment using BWA (Burrows-Wheeler Aligner), supporting both short and long read alignment to reference genomes with indexing, BWA-MEM, and BWA-backtrack algorithms.

  Last updated 2025-07-10

  MIT

• PubMed-MCP-Server

  JackKuo666

  A

  license

  -

  quality

  F

  maintenance

  🔍 Enable AI assistants to search, access, and analyze PubMed articles through a simple MCP interface.

  Last updated 2025-05-08

  121

  MIT
• 

  Glygen MCP Serverofficial

  glygener

  F

  license

  -

  quality

  B

  maintenance

  MCP server that enables querying GlyGen for summaries of proteins, glycans, sites, biomarkers, and diseases.

  Last updated 2026-07-15

• PubTator-MCP-Server

  JackKuo666

  A

  license

  -

  quality

  D

  maintenance

  🔍 A biomedical literature annotation and relationship mining server based on PubTator3, providing convenient access through the MCP interface.

  Last updated 2025-03-31

  9

  MIT

• protein-mcp-server

  cyanheads

  A

  license

  -

  quality

  A

  maintenance

  A Model Context Protocol server providing programmatic access to 3D protein structural data from RCSB PDB, PDBe, and UniProt, enabling search, retrieval, comparison, and analysis of protein structures.

  Last updated 2026-07-03

  212

  5

  Apache 2.0

• @cyanheads/brapi-mcp-server

  cyanheads

  A

  license

  -

  quality

  A

  maintenance

  A collaborative BrAPI v2.1 workspace for multi-agent research via MCP, enabling search and retrieval of studies, germplasm, genotypes, and more across any BrAPI v2-compliant server.

  Last updated 2026-07-16

  274

  3

  Apache 2.0

• ketcher-mcp-server

  lunnynight

  A

  license

  -

  quality

  C

  maintenance

  MCP server for Ketcher chemical structure editor integration, enabling SMILES/MOL/InChI conversion, image generation, molecular property calculation, and validation.

  Last updated 2026-03-10

  MIT

• UniProt MCP Server

  vitamin3615

  A

  license

  -

  quality

  D

  maintenance

  An MCP server that enables language models to fetch protein information from the UniProt database, including protein details, sequences, functions, and structures.

  Last updated 2025-04-01

  MIT

• bvbrc-mcp-server

  cucinellclark

  F

  license

  -

  quality

  B

  maintenance

  MCP server for querying BV-BRC biological data, submitting analysis jobs (assembly, annotation, BLAST, etc.), and managing workspace files via natural language.

  Last updated 2026-07-24

• bioRxiv-MCP-Server

  JackKuo666

  F

  license

  -

  quality

  F

  maintenance

  🔍 Enable AI assistants to search and access bioRxiv papers through a simple MCP interface. The bioRxiv MCP Server provides a bridge between AI assistants and bioRxiv's preprint repository through the Model Context Protocol (MCP). It allows AI models to search for biology preprints and access their

  Last updated 2025-03-18

  24

• clinicaltrialsgov-mcp-server

  cyanheads

  A

  license

  A

  quality

  A

  maintenance

  Empowers AI agents with direct access to the official ClinicalTrials.gov database, enabling programmatic searching, retrieval, and analysis of clinical study data through a Model Context Protocol interface.

  Last updated 2026-07-26

  7

  1,659

  83

  Apache 2.0

• Gen3 MCP Server

  delocalizer

  A

  license

  A

  quality

  D

  maintenance

  A Model Context Protocol (MCP) server for interacting with Gen3 data commons, with GraphQL query validation to reduce hallucinations.

  Last updated 2025-06-13

  5

  4

  MIT

• Rosetta MCP Server

  Arielbs

  A

  license

  A

  quality

  F

  maintenance

  An MCP server that enables AI coding assistants to interact with Rosetta, PyRosetta, and Biotite for running RosettaScripts, validating XML, translating between Rosetta and Biotite, scoring structures, and querying documentation.

  Last updated 2026-04-05

  19

  138

  17

  MIT
• 

  Noctua MCP Serverofficial

  geneontology

  A

  license

  A

  quality

  C

  maintenance

  Enables editing and querying of Gene Ontology Causal Activity Models (GO-CAMs) through the Barista API. Supports model creation, individual and fact management, evidence addition, and causal pathway construction for biological knowledge representation.

  Last updated 2025-11-01

  18

  BSD 3-Clause