get_text_mined_terms
Extract text-mined entities from PubMed articles via Europe PMC. Identify genes, diseases, chemicals, and other key concepts with counts and sections.
Instructions
Get text-mined annotations from Europe PMC.
Returns entities extracted from the article text including genes, diseases, chemicals, organisms, and more. Useful for identifying key concepts.
Args: pmid: PubMed ID of the article (accepts: "12345678", 12345678). pmcid: PMC ID (alternative to PMID, accepts: "PMC7096777", "7096777"). semantic_type: Filter by entity type. Options: - "GENE_PROTEIN": Genes and proteins - "DISEASE": Diseases and conditions - "CHEMICAL": Drugs and chemicals - "ORGANISM": Species and organisms - "GO_TERM": Gene Ontology terms - None: Return all types (default)
Returns: List of text-mined entities with counts and sections.
Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| pmid | No | ||
| pmcid | No | ||
| semantic_type | No | ||
| output_format | No | markdown |
Output Schema
| Name | Required | Description | Default |
|---|---|---|---|
| result | Yes |