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get_gene_literature

Retrieve PubMed articles linked to a specific gene via NCBI's curated gene-to-publication links for precise results.

Instructions

Get PubMed articles linked to a gene.

This uses NCBI's curated gene-to-publication links, which are more precise than keyword searches.

Args: gene_id: NCBI Gene ID limit: Maximum PubMed IDs to return (1-100)

Returns: JSON with linked PubMed IDs

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
gene_idYes
limitNo

Output Schema

TableJSON Schema
NameRequiredDescriptionDefault
resultYes
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description carries the burden and discloses the data source (NCBI curated links) and return format (JSON with PubMed IDs). It also notes the limit parameter range. However, it omits details like authentication or rate limits.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is very concise, front-loading the purpose in the first line, using efficient formatting for args and returns, and no superfluous text.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool's simplicity and the presence of an output schema, the description is sufficiently complete, covering input, output, and data source. Minor gaps exist (e.g., no mention of error handling), but overall adequate.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Despite 0% schema coverage, the description explains both parameters: gene_id as NCBI Gene ID and limit with a range (1-100), adding value beyond the schema's type definitions.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool gets PubMed articles linked to a gene, specifying the resource and action. It distinguishes from siblings like get_compound_literature or get_gene_details by focusing on curated gene-publication links.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description mentions it uses NCBI's curated links and is 'more precise than keyword searches', implying a use case, but it does not explicitly state when to use this tool versus alternatives or provide exclusion criteria.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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