Skip to main content
Glama
pipeworx-io

mcp-monarch-initiative

by pipeworx-io
OverviewSchemaRelated ServersScoreDiscussions
TypeScript
Remote

mcp-monarch-initiative

Monarch Initiative MCP — biomedical knowledge graph.

Part of Pipeworx — an MCP gateway connecting AI agents to 673+ live data sources.

Tools

Tool

Description

search

Full-text node search.

entity

Single node by curie (e.g. "MONDO:0007947").

associations

Associations involving an entity.

phenotype_to_gene

Genes annotated to a phenotype (HP:… id).

gene_to_disease

Diseases associated with a gene (NCBIGene:… or HGNC:… id).

Related MCP server: AGR MCP Server

Quick Start

Add to your MCP client (Claude Desktop, Cursor, Windsurf, etc.):

{
  "mcpServers": {
    "monarch-initiative": {
      "url": "https://gateway.pipeworx.io/monarch-initiative/mcp"
    }
  }
}

Or connect to the full Pipeworx gateway for access to all 673+ data sources:

{
  "mcpServers": {
    "pipeworx": {
      "url": "https://gateway.pipeworx.io/mcp"
    }
  }
}

Using with ask_pipeworx

Instead of calling tools directly, you can ask questions in plain English:

ask_pipeworx({ question: "your question about Monarch Initiative data" })

The gateway picks the right tool and fills the arguments automatically.

More

License

MIT

This server cannot be installed

A
license - permissive license
-
quality - not tested
C
maintenance

How are these scores calculated?

Maintenance

–Maintainers
–Response time
–Release cycle
–Releases (12mo)
Commit activity

Resources

Unclaimed servers have limited discoverability.

Looking for Admin?

If you are the server author, to access and configure the admin panel.

Related MCP Servers

  • AGR MCP Server

    nuin
    A
    license
    B
    quality
    C
    maintenance
    Enables querying genomics data from the Alliance of Genome Resources across model organisms including human, mouse, rat, zebrafish, fly, worm, yeast, and xenopus. Supports gene searches, disease associations, expression data, orthologs, phenotypes, and molecular interactions through natural language.
    Last updated
    22
    22
    MIT

  • MyGene MCP Server

    nickzren
    A
    license
    -
    quality
    C
    maintenance
    Enables AI assistants to query gene annotations, expression, pathways, variants, and more via the MyGene.info API, supporting batch operations and multiple biological data sources.
    Last updated
    MIT

  • mcp-ubergraph-query

    twhetzel
    A
    license
    A
    quality
    D
    maintenance
    Enables AI assistants to query the Ubergraph biomedical ontology SPARQL endpoint with tools for custom SPARQL queries, term lookup, search, and hierarchy traversal.
    Last updated
    4
    MIT

View all related MCP servers

Related MCP Connectors

  • wikidata-mcp-server

    Search and fetch Wikidata entities, execute SPARQL queries, and resolve external identifiers.

  • Opentargets

    Open Targets MCP — disease/target/drug knowledge graph.

  • Medical Terminologies MCP

    Diagnoses, drugs & lab codes: ICD-11, SNOMED, LOINC, RxNorm, MeSH, ATC, CID-10. 37 tools, MIT.

View all MCP Connectors

Latest Blog Posts

MCP directory API

We provide all the information about MCP servers via our MCP API.

curl -X GET 'https://glama.ai/api/mcp/v1/servers/pipeworx-io/mcp-monarch-initiative'

If you have feedback or need assistance with the MCP directory API, please join our Discord server