Skip to main content
Glama
rcsb

io.github.rcsb/rcsb-mcp

Official
by rcsb

rcsb_get_entry_groups

Read-onlyIdempotent

Fetch entry group metadata from RCSB PDB by group ID, including group name, description, member count, and member IDs.

Instructions

Fetch entry groups (clusters of related entries) by group ID.

Default fields: group name, description, member count, and member ids.

Args: group_ids: entry-group ids, e.g. ["G_1002266"]. Unknown IDs are returned under "not_found". fields: Optional GraphQL selection replacing the curated default (e.g. "rcsb_group_info.group_name"); discover/verify paths with rcsb_describe_data_object("entry_groups") (see the server instructions).

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
fieldsNo
group_idsYes

Output Schema

TableJSON Schema
NameRequiredDescriptionDefault

No arguments

Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Annotations already establish read-only, idempotent, non-destructive behavior. The description adds meaningful behavioral details: unknown IDs are returned under 'not_found', the fields parameter replaces the curated default selection, and field paths can be discovered programmatically. This goes beyond the annotations without contradicting them.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is front-loaded with the primary purpose, then uses efficient structured lines for defaults and arguments. Every sentence adds necessary information, with no fluff or repetition of schema fields.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a tool with a moderate retrieval use case and an output schema present, the description covers the key points: what the tool fetches, default fields, parameter semantics, and edge-case behavior. It does not detail the exact output structure, but the output schema handles that, so the description is sufficiently complete.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The schema provides zero descriptions, so the description carries full burden. It thoroughly explains group_ids with an example and the 'not_found' behavior, and explains fields as an optional GraphQL selection with an example and a discovery method. Both parameters are fully contextualized.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description opens with a specific verb-resource pairing: 'Fetch entry groups (clusters of related entries) by group ID.' This both defines the resource type and clearly distinguishes it from sibling tools like rcsb_get_entries or rcsb_get_polymer_entity_groups.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description provides clear context for how to use the tool, including default fields, the use of group_ids with an example, and the behavior for unknown IDs. It also instructs how to discover valid field paths via rcsb_describe_data_object, but it does not explicitly state when to choose this tool over alternative group-related tools.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

Install Server

Other Tools

Latest Blog Posts

MCP directory API

We provide all the information about MCP servers via our MCP API.

curl -X GET 'https://glama.ai/api/mcp/v1/servers/rcsb/rcsb-mcp'

If you have feedback or need assistance with the MCP directory API, please join our Discord server