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io.github.rcsb/rcsb-mcp

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    Deploy Server
    One endpoint for every MCP toolRayrun runs every MCP server behind one URL and holds the credentials. Each call is decided per client, tool, and argument, then recorded.ray.runAd

    TDQS

    A4.1/5.0

    Scored across 36 tools

    Disambiguation5/5

    Every tool targets a distinct resource or action: searches differ by modality (text, attribute, sequence, chemical, structure, sequence motif, structural motif), resolvers by ontology type, and get tools by entity kind. Descriptions explicitly call out differences, e.g., rcsb_search_by_structure vs rcsb_search_strucmotif, so an agent can reliably pick the right tool.

    Naming Consistency4/5

    Tool names overwhelmingly follow rcsb_<verb>_<object> with consistent verb families: search_by_*, get_*, describe_*, find_*, seqcoord_*. The main deviation is rcsb_search_strucmotif lacking the 'by' present in rcsb_search_by_seqmotif, which slightly breaks the otherwise predictable pattern.

    Tool Count2/5

    36 tools is well beyond the 15-tool typical range and even beyond the 16-25 'heavy' band. While the RCSB PDB archive is a large domain, this many tools makes the MCP surface feel bloated and harder for an agent to navigate efficiently.

    Completeness5/5

    The surface is thorough for a read-only structure archive: multiple search modalities (text, attribute, sequence, chemical, structure, motifs), ontology resolvers, schema discovery tools, sequence-coordinate cross-referencing, and retrieval for every entity type (entries, polymers, non-polymers, branched, assemblies, interfaces, groups, UniProt, PubMed). Paging, batching, and reporting are handled, leaving no obvious dead ends.

    Maintenance

    ActivitySlowing
    ResponsivenessNo issues

    Resources