Skip to main content
Glama
pickleton89

cBioPortal MCP Server

by pickleton89

Related Servers

Alternatives to cBioPortal MCP Server

No user-submitted related servers found.

    Related Servers

    • A
      license
      Not graded
      quality
      C
      maintenance
      Enables natural-language access to R maftools cancer genomics analyses, including mutation summaries, oncoplots, cohort comparisons, mutation signatures, clinical enrichment, survival analyses, and copy-number visualization.
      MIT
    • A
      license
      A
      quality
      A
      maintenance
      An MCP server that gives AI assistants access to biological and biomedical RDF databases via SPARQL at the RDF Portal, as well as selected REST APIs (NCBI E-utilities, UniProt, ChEMBL, PDB, Reactome, Rhea, MeSH, and more).
      29
      16
      MIT
    • A
      license
      Not graded
      quality
      C
      maintenance
      A remote, read-only MCP server for the CAN-IMMUNE cancer neoantigen platform, enabling AI agents to query the database in plain language. It provides tools for searching genes, cell lines, mutations, and MHC binding data.
      MIT
    • F
      license
      B
      quality
      A
      maintenance
      BioMCP is an open-source MCP server that connects any AI assistant to 15 open bioinformatics databases with zero configuration. It provides 23 tools for literature, sequences, BLAST, structures, enrichment, annotations, genomes, interactions, variants, domains, compounds, and single-cell data.
      73
      23 PyPI
      12
      -
    • A
      license
      Not graded
      quality
      B
      maintenance
      MCP server for querying gene annotations, full-text gene search, and species taxonomy via MyGene.info. Enables AI agents to access gene data through natural language questions.
      180 npm
      MIT

    TDQS

    C2.8/5.0

    Scored across 17 tools

    Disambiguation4/5

    Most tools have distinct purposes targeting specific resources like studies, genes, or clinical data, but there is some overlap between 'get_genes' and 'get_multiple_genes' which could cause confusion, and 'collect_all_results' and 'paginate_results' are both pagination utilities with unclear boundaries.

    Naming Consistency5/5

    Tool names follow a consistent verb_noun pattern throughout, such as 'get_cancer_studies', 'search_genes', and 'get_mutations_in_gene', with no deviations in style or convention, making them predictable and readable.

    Tool Count4/5

    With 17 tools, the count is slightly high but reasonable for a bioinformatics domain like cBioPortal, covering various data retrieval and search operations without feeling excessively bloated.

    Completeness4/5

    The tool set provides comprehensive coverage for querying studies, genes, clinical data, and molecular profiles, with minor gaps such as lacking update or delete operations, but this is typical for a read-only API server focused on data retrieval.

    Maintenance

    ActivityInactive
    ResponsivenessNo issues