cBioPortal MCP Server
Related Servers
Alternatives to cBioPortal MCP Server
No user-submitted related servers found.
Related Servers
- AlicenseNot gradedqualityBmaintenanceEnables AI agents to search public cancer genomics studies (TCGA, CPTAC, MSK, and more), fetch full details for individual studies, resolve gene symbols to Entrez ids, and list cancer types. Works keylessly against open cBioPortal data over a hosted MCP endpoint, a local stdio server, or plain HTTP.9 npmMIT
- AlicenseNot gradedqualityBmaintenanceEnables natural-language access to R maftools cancer genomics analyses, including mutation summaries, oncoplots, cohort comparisons, mutation signatures, clinical enrichment, survival analyses, and copy-number visualization.MIT
- AlicenseAqualityAmaintenanceAn MCP server that gives AI assistants access to biological and biomedical RDF databases via SPARQL at the RDF Portal, as well as selected REST APIs (NCBI E-utilities, UniProt, ChEMBL, PDB, Reactome, Rhea, MeSH, and more).2919MIT
- AlicenseNot gradedqualityCmaintenanceA remote, read-only MCP server for the CAN-IMMUNE cancer neoantigen platform, enabling AI agents to query the database in plain language. It provides tools for searching genes, cell lines, mutations, and MHC binding data.MIT
- FlicenseBqualityAmaintenanceBioMCP is an open-source MCP server that connects any AI assistant to 15 open bioinformatics databases with zero configuration. It provides 23 tools for literature, sequences, BLAST, structures, enrichment, annotations, genomes, interactions, variants, domains, compounds, and single-cell data.7336 PyPI14-
- AlicenseNot gradedqualityDmaintenanceA Model Context Protocol server that enables Claude Desktop to search clinicaltrials.gov for matching clinical trials based on genetic mutations provided in natural language queries.1MIT
TDQS
Scored across 17 tools
Most tools have distinct purposes targeting specific resources like studies, genes, or clinical data, but there is some overlap between 'get_genes' and 'get_multiple_genes' which could cause confusion, and 'collect_all_results' and 'paginate_results' are both pagination utilities with unclear boundaries.
Tool names follow a consistent verb_noun pattern throughout, such as 'get_cancer_studies', 'search_genes', and 'get_mutations_in_gene', with no deviations in style or convention, making them predictable and readable.
With 17 tools, the count is slightly high but reasonable for a bioinformatics domain like cBioPortal, covering various data retrieval and search operations without feeling excessively bloated.
The tool set provides comprehensive coverage for querying studies, genes, clinical data, and molecular profiles, with minor gaps such as lacking update or delete operations, but this is typical for a read-only API server focused on data retrieval.