vep_id_batch
Batch annotate multiple variant identifiers (rs, COSM, etc.) to retrieve functional consequences, conservation scores, and pathogenicity predictions from Ensembl VEP.
Instructions
Annotate multiple variants using identifiers in batch
Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| species | Yes | Species name (e.g., 'homo_sapiens', 'mus_musculus') | homo_sapiens |
| variant_ids | Yes | List of variant identifiers (e.g., ['rs56116432', 'COSM476']) | |
| canonical | No | Include only canonical transcripts per gene | |
| hgvs | No | Include HGVS nomenclature | |
| domains | No | Include protein domain information | |
| ccds | No | Include CCDS transcript identifiers | |
| protein | No | Include protein sequence identifiers | |
| AlphaMissense | No | Include AlphaMissense pathogenicity scores | |
| CADD | No | Include CADD deleteriousness scores | |
| REVEL | No | Include REVEL pathogenicity scores | |
| Conservation | No | Include conservation scores |