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mfiume

Omics AI MCP Server

by mfiume

get_schema_fields

Retrieve table schema fields for genomics datasets to understand data structure before analysis, supporting research across Omics AI Explorer platforms.

Instructions

Get the schema fields for a specific table

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
networkYesNetwork name or URL
collection_slugYesCollection slug name
table_nameYesQualified table name (e.g., 'collections.gnomad.variants')
access_tokenNoOptional access token for authentication
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description carries the full burden of behavioral disclosure. It states the action ('Get') but doesn't describe what 'schema fields' include (e.g., column names, types, constraints), whether authentication is required (though 'access_token' is optional in schema), or any rate limits or errors. This leaves significant gaps for a tool with no annotation coverage.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is a single, efficient sentence that directly states the tool's purpose without unnecessary words. It's appropriately sized and front-loaded, making it easy to understand at a glance.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness2/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the complexity (4 parameters, no annotations, no output schema), the description is incomplete. It doesn't explain the return format (e.g., JSON structure of schema fields), potential errors, or usage context relative to siblings. For a tool with no structured output or behavioral hints, more detail is needed to guide effective use.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 100%, so the input schema already documents all parameters well. The description doesn't add meaning beyond this, such as explaining relationships between parameters (e.g., how 'network', 'collection_slug', and 'table_name' combine to identify the table). Baseline 3 is appropriate as the schema handles the heavy lifting.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose4/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the verb ('Get') and resource ('schema fields for a specific table'), making the purpose evident. However, it doesn't distinguish this tool from sibling tools like 'list_tables' or 'query_table', which might also involve schema-related operations, so it lacks sibling differentiation.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description provides no guidance on when to use this tool versus alternatives. It doesn't mention prerequisites, such as needing to know the table name from 'list_tables', or contrast it with siblings like 'query_table' for data retrieval versus schema inspection.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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