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mfiume

Omics AI MCP Server

by mfiume

count_rows

Count rows in genomics datasets using filters to analyze data in Omics AI Explorer networks. Specify network, collection, and table to get precise row counts for research queries.

Instructions

Count the number of rows matching given filters

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
networkYesNetwork name or URL
collection_slugYesCollection slug name
table_nameYesQualified table name
filtersNoDictionary of filters to apply
access_tokenNoOptional access token for authentication
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description carries the full burden. It mentions 'matching given filters' which implies filtering behavior, but doesn't disclose authentication needs (though 'access_token' parameter hints at it), rate limits, performance characteristics, error conditions, or what the return value looks like (just a count number or structured response).

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is a single, efficient sentence with zero wasted words. It's appropriately sized for a counting operation and front-loads the core functionality immediately.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness2/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a tool with 5 parameters, no annotations, and no output schema, the description is inadequate. It doesn't explain the return format (e.g., integer count, JSON structure), error handling, authentication requirements, or how filters work with the table context. The schema handles parameter documentation, but behavioral aspects are largely missing.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 100%, so the schema already documents all 5 parameters thoroughly. The description adds minimal value beyond the schema by implying that 'filters' parameter is used for matching rows, but doesn't provide additional syntax, format details, or examples beyond what the schema provides.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose4/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the verb ('Count') and resource ('rows'), specifying that it counts rows matching given filters. It distinguishes from siblings like 'query_table' or 'sql_search' by focusing on counting rather than retrieving data, but doesn't explicitly differentiate from them in the description text.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description provides no guidance on when to use this tool versus alternatives like 'query_table' or 'sql_search', nor does it mention prerequisites or context for usage. It simply states what the tool does without indicating appropriate scenarios.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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