Executes a generic RMA (RESTful Model Access) query against the Allen Brain API. Useful for querying arbitrary data models like 'Specimen', 'SectionDataSet', 'Structure', etc.

Retrieve cell specimens from the Allen Cell Types Database.

Get electrophysiology sweep records for a specific cell specimen from the Allen Cell Types Database.

Retrieve electrophysiology features for all cells in the Allen Cell Types Database.

Retrieve morphology features (neuron reconstruction metadata) for all cells in the Allen Cell Types Database.

Download the morphological reconstruction of a cell specimen as an SWC file to a local path.

Download electrophysiology recordings for a cell specimen as an NWB file to a local path.

Retrieve experiments from the Mouse Brain Connectivity Atlas.

Retrieve atlases available through the API (from OntologiesApi).

Retrieve structure graphs (from OntologiesApi).

Retrieve data about anatomical structures (from OntologiesApi).

List atlas images belonging to a specified atlas (from ImageDownloadApi).

List section images belonging to a specified section data set (from ImageDownloadApi).

Download a 2D section image as a JPEG file to a local path. Supports downsampling, quality, and partial region extraction.

Download a 2D atlas image as a JPEG file to a local path.

Download SVG structure overlay for a section image to a local file.

Returns the URL to download 3-D expression grid data for a section data set (does not download).

Download 3D expression grid data as a ZIP archive (metaimage format) containing energy, density, and/or intensity volumes.

Download 3D projection grid data in NRRD format for mouse connectivity experiments.

Download a brain annotation volume in NRRD format from the Allen Common Coordinate Framework (CCF).

Download a 3D brain structure mesh in Wavefront OBJ format.

List section data sets (experiments) produced as part of one or more Allen Institute products.

List downloadable files (WellKnownFiles) attached to any Allen resource such as a Product, Specimen, or SectionDataSet. Use this to discover transcriptomics matrices, reference data, or other bulk downloads.

Download any Allen Institute file by its WellKnownFile ID (obtain via list_well_known_files or execute_rma_query on the WellKnownFile model). Covers transcriptomics CSV matrices, NWB files, SWC reconstructions, and any other bulk download.

List all Allen Institute products (atlases, databases, and data collections). Useful for discovering product IDs needed by list_well_known_files and get_section_data_sets_by_product.

Fetch biophysically detailed model records (from BiophysicalApi/GlifApi).