Translate sequence
computase_translate_sequenceTranslate DNA or RNA sequences into amino acid sequences using a specified NCBI genetic code. Handles IUPAC ambiguity codes and configurable stop-codon policies.
Instructions
Translate complete codons with a selected NCBI genetic code.
Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| sequence | Yes | Raw nucleotide sequence or one FASTA record; IUPAC codes are accepted. The normalized sequence is limited to 5,000,000 nucleotides. | |
| table_id | No | NCBI genetic-code table identifier. | |
| stop_handling | No | Stop-codon handling policy. | translate-through |
Output Schema
| Name | Required | Description | Default |
|---|---|---|---|
| protein | Yes | Translated protein, with stops represented as '*'. | |
| table_id | Yes | NCBI genetic-code table identifier. | |
| parameters | No | Effective operation parameters, excluding the input sequence. | |
| table_name | Yes | Primary NCBI genetic-code table name. | |
| codon_count | Yes | Number of complete input codons. | |
| stop_handling | Yes | Effective stop-codon handling policy. | |
| stopped_early | Yes | Whether translation was truncated at an encountered stop codon. | |
| computase_version | No | Computase version used for the computation. | 0.1.1 |