Summarize sequence
computase_summarize_sequenceSummarize DNA/RNA sequence composition, GC uncertainty, and GC skew to provide a quick overview of key sequence characteristics.
Instructions
Summarize composition, GC uncertainty, and GC skew.
Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| sequence | Yes | Raw nucleotide sequence or one FASTA record; IUPAC codes are accepted. The normalized sequence is limited to 5,000,000 nucleotides. |
Output Schema
| Name | Required | Description | Default |
|---|---|---|---|
| length | Yes | Normalized sequence length. | |
| gc_skew | Yes | Concrete-base (G-C)/(G+C), or null when no concrete G/C exists. | |
| gc_percent | Yes | GC percentage over residues with determinate GC status. | |
| parameters | No | Effective operation parameters, excluding the input sequence. | |
| composition | Yes | Counts for every residue present. | |
| dinucleotides | Yes | Counts of overlapping adjacent residue pairs. | |
| sequence_type | Yes | Detected nucleotide alphabet. | |
| gc_max_percent | Yes | Maximum possible GC percentage under IUPAC resolutions. | |
| gc_min_percent | Yes | Minimum possible GC percentage under IUPAC resolutions. | |
| ambiguous_count | Yes | Number of non-ACGT or non-ACGU IUPAC residues. | |
| computase_version | No | Computase version used for the computation. | 0.1.1 |