Click on "Install Server".
Wait a few minutes for the server to deploy. Once ready, it will show a "Started" state.
In the chat, type @ followed by the MCP server name and your instructions, e.g., "@mcp-gtex show median expression of TP53 across tissues"
That's it! The server will respond to your query, and you can continue using it as needed.
Here is a step-by-step guide with screenshots.
GTEx MCP.
Part of Pipeworx — an MCP gateway connecting AI agents to 673+ live data sources.
Tool | Description |
| Gene metadata by Gencode id or symbol. |
| Median expression across tissues for a gene (TPM). |
| Top expressed genes for a tissue. |
| Significant single-tissue eQTLs for a gene. |
| List of tissues. |
Related MCP server: clingen-link
Add to your MCP client (Claude Desktop, Cursor, Windsurf, etc.):
{
"mcpServers": {
"gtex": {
"url": "https://gateway.pipeworx.io/gtex/mcp"
}
}
}Or connect to the full Pipeworx gateway for access to all 673+ data sources:
{
"mcpServers": {
"pipeworx": {
"url": "https://gateway.pipeworx.io/mcp"
}
}
}Instead of calling tools directly, you can ask questions in plain English:
ask_pipeworx({ question: "your question about Gtex data" })The gateway picks the right tool and fills the arguments automatically.
MIT
This server cannot be installed
Unclaimed servers have limited discoverability.
If you are the server author, to access and configure the admin panel.
MCP gateway federating 21 biomedical MCP servers behind one endpoint: gnomAD, ClinVar, HPO, VEP.
ClinicalTrials MCP — wraps ClinicalTrials.gov API v2 (free, no auth)
EBI Expression Atlas MCP.
We provide all the information about MCP servers via our MCP API.
curl -X GET 'https://glama.ai/api/mcp/v1/servers/pipeworx-io/mcp-gtex'
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