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kettly1260
by kettly1260

merge_compounds

Merge compound records by transferring aliases and reaction links from a source compound to a target compound, consolidating duplicate entries.

Instructions

Merge source compound aliases/reaction links into a target compound.

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
source_compound_idYes
target_compound_idYes
tokenNo

Output Schema

TableJSON Schema
NameRequiredDescriptionDefault

No arguments

Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations provided. The description implies mutation ('merge') but lacks details on side effects, reversibility, or authorization needs. Important behavioral traits like idempotency or conflict handling are absent.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

A single, clear sentence with no extraneous words. Efficient and to the point.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness2/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the complexity of a merge operation and zero schema coverage, the description is insufficient. It does not address the merge semantics, output format, or edge cases. An output schema exists but is not described.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters2/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0%, so the description must compensate. It names source_compound_id and target_compound_id but does not explain their format or purpose beyond the obvious. The optional 'token' parameter is entirely undeclared in meaning.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the verb 'merge' and the resources 'compound aliases/reaction links' into a target compound. It distinguishes itself from sibling tools like 'get_compound' and 'search_compounds' by being a merge operation.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

No explicit guidance on when to use this tool versus alternatives, no prerequisites or exclusions mentioned. The description is purely functional without usage context.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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