Best Zenodo MCP Servers
Zenodo is a general-purpose open-access repository developed under the European OpenAIRE program and operated by CERN. It allows researchers to deposit research papers, data sets, research software, reports, and any other research related digital artifacts.
Why this server?
Provides access to EFSA's OpenFoodTox database hosted on Zenodo, enabling natural language queries for chemical hazards data including 8,006 substances, toxicity endpoints, risk assessments, and genotoxicity studies from EFSA's scientific opinions.
AlicenseAqualityDmaintenanceEnables natural language querying of EFSA's OpenFoodTox database containing 8,006 chemical substances with toxicity data, safety assessments, risk limits, and genotoxicity studies for food additives, pesticides, and contaminants.Last updated95MITWhy this server?
Enables searching for datasets and files on Zenodo, with support for fetching and checksum verification.
AlicenseAqualityBmaintenanceSearches and fetches research datasets across Zenodo, DataCite (Dryad/Figshare/Dataverse/OSF), NCBI omics archives (GEO/SRA/BioProject), and the literature (PubMed/OpenAIRE) through one normalized model — deduplicating by DOI, expanding organism queries with NCBI Taxonomy synonyms, and bridging papers to the datasets they produced. Resolves citations and open-access full text, and downloads files.Last updated62MITWhy this server?
Allows discovering, retrieving, citing, and evaluating scientific records from the Zenodo repository.
AlicenseAqualityCmaintenanceAn MCP server for discovering, retrieving, citing, and evaluating scientific records from the Zenodo repository.Last updated18MITWhy this server?
Search and download (record-dependent) papers from Zenodo.
AlicenseBqualityBmaintenanceA Model Context Protocol server for searching and downloading academic papers from multiple free and public sources, enabling LLM-driven academic research workflows.Last updated57MITWhy this server?
Allows downloading public whole-genome sequencing sample genomes from Zenodo for PRS computation and analysis.
AlicenseAqualityBmaintenanceMCP server for polygenic risk score analysis, wrapping just-prs to enable catalog search, PRS computation, VCF normalization, percentile and risk estimation, and quality assessment.Last updated161MITWhy this server?
Allows searching papers from Zenodo, a general-purpose open-access repository.
AlicenseAqualityAmaintenanceComprehensive MCP server for academic research workflows, enabling paper searching across multiple sources, manuscript processing with citation placeholders, search caching, and citation export.Last updated11MITWhy this server?
References Zenodo DOIs for HDP delegation chain validation, providing academic citation and verification of security standards.
AlicenseAqualityFmaintenanceProvides three AI security tools for Claude: scanning MCP servers for security risks, validating HDP delegation chains against IETF standards, and triaging security alerts with kill-chain analysis.Last updated3Apache 2.0Why this server?
Provides access to example single-cell lineage tracing datasets for loading via load_example_dataset.
AlicenseAqualityCmaintenanceMCP server for single-cell lineage tracing analysis, enabling conversational reconstruction, visualization, and heritability analysis of lineage trees using Cassiopeia, pycea, and treedata.Last updated18MITWhy this server?
Supports obtaining repository summaries and metadata quality reports for Zenodo (and other DataCite member repositories), with automatic resolution of repository names to DataCite client IDs.
FlicenseAqualityCmaintenanceProvides read-only access to DataCite's index of 125M+ research DOIs via natural language queries, enabling searching, metadata retrieval, citation formatting, and relationship exploration.Last updated9