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Biomolecule Modeling MCP Server

by huangjianhuster
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    Deploy Server
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    TDQS

    A4.6/5.0

    Scored across 9 tools

    Disambiguation5/5

    Each tool has a clearly distinct role: working directory setup, structural analysis, force-field lookup, splitting, fixing, assembling, relaxing, and workflow reporting. There is no overlap or ambiguity about which tool to call for a given purpose.

    Naming Consistency5/5

    All tool names follow the consistent verb_noun pattern with lowercase and underscores (e.g., set_working_directory, query_pdb_structure, relax_pdb_structure). Minor plural variations like 'structures' vs 'structure' do not disrupt the pattern.

    Tool Count5/5

    The server has 9 tools, which is well within the ideal 3-15 range. Each tool covers a necessary step in the biomolecule preparation workflow, and none feel redundant or extraneous.

    Completeness5/5

    The workflow is fully covered: setup, inspection, force-field info, splitting, fixing, assembling, relaxing, and reporting. There are no obvious gaps for the stated purpose of preparing and relaxing PDB structures.

    Maintenance

    ActivityInactive
    ResponsivenessNo issues

    Resources