SCMCP

Instructions

Implementation Reference

• src/scmcp/tool/ccc.py:49-50 (handler)

  The handler function that lists available cell-cell communication methods by calling liana.mt.show_methods() and converting the result to a string.

  def ls_ccc_method():
      return str(li.mt.show_methods())

• src/scmcp/schema/ccc.py:6-8 (schema)

  Pydantic model defining the input schema for the ls_ccc_method tool. It is empty since the tool requires no input parameters.

  class ListCCCMethodModel(JSONParsingModel):
      """ListCCCMethodModel"""    
      pass    

• src/scmcp/tool/ccc.py:15-19 (registration)

  Definition of the MCP Tool object for 'ls_ccc_method', including name, description, and input schema.

  ls_ccc_method_tool = types.Tool(
      name="ls_ccc_method",
      description="List cell-cell communication method.",
      inputSchema=ListCCCMethodModel.model_json_schema(),
  )

• src/scmcp/tool/ccc.py:92-98 (registration)

  Dictionary registering the handler function for 'ls_ccc_method' (and other CCC tools) to be used in the dispatcher.

  ccc_func = {
      "ls_ccc_method": ls_ccc_method,
      "ccc_rank_aggregate": li.mt.rank_aggregate,
      "ccc_circle_plot": plot_circleplot,
      "ccc_dot_plot": plot_dotplot,
      "ccc": run_ccc,
  }

• src/scmcp/tool/ccc.py:100-106 (registration)

  Dictionary registering the Tool objects for 'ls_ccc_method' (and other CCC tools), used by the MCP server for listing and calling.

  ccc_tools = {
      "ls_ccc_method": ls_ccc_method_tool,
      "ccc_rank_aggregate": rank_aggregate_tool,
      "ccc_circle_plot": circle_plot_tool,
      "ccc_dot_plot": dot_plot_tool,
      "ccc": ccc_tool,
  }