export_genotypes
Export a variant set to a file in VCF, PLINK, or Flapjack format. Specify the variant set database ID and output path to download the genotyping data.
Instructions
Export a variant set to a file in the given format.
format is one of Gigwa's export formats. Which are available depends on the Gigwa
build — VCF (default), PLINK and FLAPJACK are commonly supported; others
(HAPMAP, DARWIN, …) may not be, in which case the tool reports the formats this
instance actually offers. The export runs server-side and is streamed to
output_path. For large sets this can take a while; raise timeout (seconds).
Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| format | No | Export format: VCF, PLINK or Flapjack (availability varies by Gigwa build). | VCF |
| timeout | No | Maximum seconds to wait for the export to complete. | |
| output_path | Yes | Destination file path for the export. | |
| variant_set_db_id | Yes | BrAPI variantSetDbId identifying the run (MODULE§project§run); from list_variant_sets / list_content. |
Output Schema
| Name | Required | Description | Default |
|---|---|---|---|
| result | Yes |