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Get Entity Summary

pubchem_get_summary
Read-onlyIdempotent

Retrieve descriptive summaries for PubChem entities including assays, genes, proteins, and taxonomy by providing their identifiers. Supports up to 10 per request.

Instructions

Get descriptive summaries for PubChem entities by ID. Supports assays (AID), genes (Gene ID), proteins (UniProt accession), and taxonomy (Tax ID). Up to 10 per call.

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
entityTypeYesEntity type. Determines ID format and returned fields.
identifiersYesEntity identifiers (1-10). Type depends on entityType: - assay: AID (number), e.g. [1000] - gene: Gene ID (number), e.g. [1956] - protein: UniProt accession (string), e.g. ["P00533"] - taxonomy: Tax ID (number), e.g. [9606]

Output Schema

TableJSON Schema
NameRequiredDescriptionDefault
noticeNoRecovery guidance when one or more identifiers were not found.
summariesYesSummary results.
entityTypeYesEntity type queried.
foundCountYesIdentifiers resolved to a summary.
requestedCountYesIdentifiers requested.
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Annotations already provide readOnlyHint, openWorldHint, and idempotentHint. The description adds behavioral context such as batch limit (up to 10) and that it returns descriptive summaries. No contradictions with annotations.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Two sentences: first states the core purpose, second lists supported types and the batch limit. Every word is informative with no redundancy.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

With output schema existing and schema fully describing parameters, the description is complete for a batch summary tool. It could briefly mention typical use cases (e.g., 'Use for quick overviews') but is sufficient as is.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 100%, so the description adds no new meaning beyond what the schema already provides for parameters. The description repeats entity type and ID format information that is fully documented in the schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool fetches descriptive summaries for PubChem entities by ID, listing four specific entity types (assays, genes, proteins, taxonomy). This distinguishes it from sibling tools like pubchem_search_compounds and pubchem_get_compound_details.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description specifies supported entity types, ID formats, and a batch limit of 10. However, it does not explicitly state when to use this tool versus more specific tools like pubchem_get_compound_details for compounds, though the distinction is implied.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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