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Get Entity Summary

pubchem_get_summary
Read-onlyIdempotent

Retrieve descriptive summaries for PubChem entities using IDs. Supports assays, genes, proteins, and taxonomy with up to 10 identifiers per request.

Instructions

Get descriptive summaries for PubChem entities by ID. Supports assays (AID), genes (Gene ID), proteins (UniProt accession), and taxonomy (Tax ID). Up to 10 per call.

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
entityTypeYesEntity type. Determines ID format and returned fields.
identifiersYesEntity identifiers (1-10). Type depends on entityType: - assay: AID (number), e.g. [1000] - gene: Gene ID (number), e.g. [1956] - protein: UniProt accession (string), e.g. ["P00533"] - taxonomy: Tax ID (number), e.g. [9606]

Output Schema

TableJSON Schema
NameRequiredDescriptionDefault
entityTypeYesEntity type queried.
summariesYesSummary results.
requestedCountYesIdentifiers requested.
foundCountYesIdentifiers resolved to a summary.
noticeNoRecovery guidance when one or more identifiers were not found.
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Annotations already declare readOnly, idempotent, and openWorld hints. Description adds constraints (4 entity types, 10 max per call) that are not in annotations, but does not cover rate limits or error behavior.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Two sentences, front-loaded with action and essential details. No wasted words; every sentence adds value.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given output schema exists, description does not need to document return values. It adequately covers purpose, supported types, and batch limit. Could mention that summaries are returned per ID, but still sufficient for a simple read tool.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema has 100% coverage with detailed descriptions for both parameters, including type-specific identifier formats. Description reinforces this but adds no new parameter-level meaning beyond the schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose4/5

Does the description clearly state what the tool does and how it differs from similar tools?

Description clearly states it retrieves descriptive summaries for PubChem entities by ID, listing supported types and a batch limit. It distinguishes from sibling tools via specificity but does not explicitly contrast them.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description implies usage for getting overviews of entities by ID, but provides no explicit when-to-use, when-not-to-use, or alternatives among siblings.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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