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pubchem-mcp-server

pubchem-mcp-server

by cyanheads
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TypeScript
Remote

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    Deploy Server
    One endpoint for every MCP toolRayrun runs every MCP server behind one URL and holds the credentials. Each call is decided per client, tool, and argument, then recorded.ray.runAd

    TDQS

    A4.1/5.0

    Scored across 10 tools

    Disambiguation4/5

    Most tools target clearly distinct PubChem resources or actions: compound search, details, image, 3D structure, safety, xrefs, bioactivity, interactions, assays, and summaries. There is some overlap between bioactivity, interactions, search_assays, and get_summary around assay/target information, but the descriptions provide enough guidance to distinguish their intended use.

    Naming Consistency5/5

    All tools use snake_case with a consistent pubchem_ prefix and predictable get/search verb patterns. Compound-specific tools follow pubchem_get_compound_* or pubchem_search_compounds, with only minor natural variation for broader tools like get_summary and get_bioactivity.

    Tool Count5/5

    Ten tools is well-scoped for a PubChem server and each tool appears to earn its place by covering a distinct retrieval need. There is no obvious redundancy or filler in the tool set.

    Completeness4/5

    The surface covers the major PubChem workflows: compound search, properties/details, bioactivity, interactions, assay discovery, 3D structures, images, safety data, cross-references, and entity summaries. Minor gaps remain, such as no dedicated full assay-detail tool beyond pubchem_get_summary and limited direct gene/protein/taxonomy search outside assay lookup, but agents can work around these.

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