MCP Sequence Simulation Server
Server Configuration
Describes the environment variables required to run the server.
| Name | Required | Description | Default |
|---|---|---|---|
No arguments | |||
Capabilities
Features and capabilities supported by this server
| Capability | Details |
|---|---|
| tools | {} |
Tools
Functions exposed to the LLM to take actions
| Name | Description |
|---|---|
| generate_dna_sequenceC | Generate random DNA sequences with specified parameters |
| generate_protein_sequenceB | Generate random protein sequences with specified parameters |
| mutate_sequenceC | Apply mutations to DNA or protein sequences |
| evolve_sequenceC | Simulate evolution of sequences over multiple generations |
| simulate_phylogenyC | Simulate phylogenetic tree and sequence evolution |
| simulate_fastq_fileB | Simulate FASTQ sequencing reads with realistic quality scores and error models based on NEAT methodology. Implementation inspired by: Stephens et al. (2016) 'Simulating Next-Generation Sequencing Datasets from Empirical Mutation and Sequencing Models.' PLOS ONE 11(11): e0167047. https://doi.org/10.1371/journal.pone.0167047 |
Prompts
Interactive templates invoked by user choice
| Name | Description |
|---|---|
No prompts | |
Resources
Contextual data attached and managed by the client
| Name | Description |
|---|---|
No resources | |
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