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bc_get_uniprot_id_by_protein_symbol

Look up the UniProt accession ID by providing a protein/gene symbol and species taxonomy ID. Returns the primary accession or None if not found.

Instructions

Retrieve UniProt accession ID from protein name and species. Returns the primary accession or None if not found.

Returns: str or None: UniProt accession ID string (e.g., 'P04637') or None if not found.

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
speciesNoOrganism taxonomy ID (e.g., '9606' for human)9606
protein_symbolYesGene or protein name to search for (e.g., 'SYNPO')

Output Schema

TableJSON Schema
NameRequiredDescriptionDefault
resultYes
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations provided, so description must cover behavioral traits. Returns primary accession or None, but does not disclose behavior on multiple matches or error cases. Adequate but minimal.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Two sentences, front-loaded with purpose, no wasted words. Perfectly concise.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given simple 2-parameter tool with output schema, description covers the essential purpose and return value. Could mention default species behavior, but overall complete.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 100%, so description adds little beyond schema. It restates that it uses protein name and species, but no additional formatting or constraints beyond schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Clearly states it retrieves a UniProt accession ID from protein name and species, specifies return type as string or None, and the name differentiates it from sibling bc_get_uniprot_protein_info.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Implied usage: when you need an accession ID from protein name. No explicit when-not-to-use or alternatives mentioned, which would be helpful given siblings like bc_get_uniprot_protein_info.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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