bc_get_panglaodb_marker_genes
Retrieve marker genes from the PanglaoDB dataset, filtering by species, organ, cell type, gene symbol, or sensitivity/specificity scores.
Instructions
Retrieve marker genes from PanglaoDB dataset with optional filters. Supports filtering by species, scores, organ, cell type, gene symbol.
Returns: dict: Markers array with gene symbols, cell types, organs, sensitivity/specificity scores or error message.
Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| species | Yes | Species: 'Hs' for Human or 'Mm' for Mouse | |
| min_sensitivity | No | Minimum sensitivity score (0-1), applied to species-specific column | |
| min_specificity | No | Minimum specificity score (0-1), applied to species-specific column | |
| organ | No | Organ filter (e.g., 'Brain', 'Lung'), case-insensitive | |
| cell_type | No | Cell type filter (e.g., 'Smooth muscle cells', 'T cells'), case-insensitive | |
| gene_symbol | No | Gene symbol filter (e.g., 'MAFB', 'SYNPO'), case-insensitive |
Output Schema
| Name | Required | Description | Default |
|---|---|---|---|
No arguments | |||