Joplin MCP Server

A FastMCP-based Model Context Protocol (MCP) server for Joplin note-taking application via its Python API joppy, enabling AI assistants to interact with your Joplin notes, notebooks, and tags through a standardized interface.

Table of Contents

• What You Can Do

• Quick Start

• Supported Clients

• Example Usage

• Tool Permissions

• Notebook Allowlist

• Advanced Configuration

• Docker

• Project Structure

• Testing

• Complete Tool Reference

• Changelog

What You Can Do

This MCP server provides 26 optimized tools for comprehensive Joplin integration:

Note Management

• Find & Search: find_notes (supports trash=True for trashed notes), find_notes_with_tag, find_notes_in_notebook, get_all_notes

• CRUD Operations: get_note, get_note_resources (read OCR text from attached images/PDFs), get_links, create_note, update_note, edit_note, delete_note

Notebook Management

• Organize: list_notebooks, create_notebook, update_notebook, delete_notebook

Tag Management

• Categorize: list_tags, create_tag, update_tag, delete_tag, get_tags_by_note

• Link: tag_note, untag_note

Trash Management

• Recover: restore_from_trash - Restore soft-deleted notes or notebooks

Import

• File Import: import_from_file - Import Markdown, HTML, CSV, TXT, JEX files and directories

System

• Health: ping_joplin

Quick Start

1. Open Joplin Desktop → Tools → Options → Web Clipper

2. Enable the Web Clipper service

3. Copy the Authorization token

4. Set up your preferred client below

Supported Clients

Any MCP-compatible client should work. Below are the ones with documented setup instructions.

Claude Desktop

Run the automated installer:

# Install and configure everything automatically (pip)
pip install joplin-mcp
joplin-mcp-install

# Or use zero-install with uvx (recommended if you have uv)
uvx --from joplin-mcp joplin-mcp-install

# Optional: pin a specific version/range for stability
uvx --from joplin-mcp==0.4.1 joplin-mcp-install
uvx --from 'joplin-mcp>=0.4,<0.5' joplin-mcp-install

This script will:

• Configure your Joplin API token

• Set tool permissions (Create/Update/Delete)

• Set up Claude Desktop automatically

• Test the connection

After setup, restart Claude Desktop and you're ready to go!

Claude Code

Install the orchestration plugin for smarter tool usage (edit vs update, long-note reading, bulk tagging):

/plugin marketplace add alondmnt/joplin-mcp
/plugin install joplin-mcp

You'll be prompted for your Joplin API token on first use. The skill is invoked automatically when working with Joplin tools, or manually with /joplin.

Jan AI

1. Install Jan AI from https://jan.ai

2. Add MCP Server in Jan's interface:

   • Open Jan AI

   • Go to Settings → Extensions → Model Context Protocol

   • Click Add MCP Server

   • Configure:

     • Name: joplin

     • Command: uvx --from joplin-mcp joplin-mcp-server (requires uv installed)

     • Environment Variables:

       • JOPLIN_TOKEN: your_joplin_api_token_here

   • Enable the server

3. Start chatting with access to your Joplin notes!

Automated Setup (Alternative)

# Install and configure Jan AI automatically (if Jan is already installed)
pip install joplin-mcp
joplin-mcp-install

This will detect and configure Jan AI automatically, just like Claude Desktop.

OllMCP (Local Ollama Models)

Auto-discovery (if you set up Claude Desktop first)

# Install ollmcp
pip install ollmcp

# Run with auto-discovery (requires existing Claude Desktop config)
ollmcp --auto-discovery --model qwen3:4b

Manual setup (works independently)

# Install ollmcp
pip install ollmcp

# Set environment variable
export JOPLIN_TOKEN="your_joplin_api_token_here"

# Run with uvx (requires uv installed)
ollmcp --server "joplin:uvx --from joplin-mcp joplin-mcp-server" --model qwen3:4b

# Or with an installed package (pip install joplin-mcp)
ollmcp --server "joplin:joplin-mcp-server" --model qwen3:4b

Example Usage

Once configured, you can ask your AI assistant:

• "List all my notebooks" - See your Joplin organization

• "Find notes about Python programming" - Search your knowledge base

• "Create a meeting note for today's standup" - Quick note creation

• "Tag my recent AI notes as 'important'" - Organize with tags

• "Show me my todos" - Find task items with find_notes(task=True)

Tool Permissions

The setup script offers 4 permission levels:

• Read (always enabled): Browse and search your notes safely

• Write (optional): Create new notes, notebooks, and tags

• Update (optional): Modify existing content

• Delete (optional): Remove content permanently

Choose the level that matches your comfort and use case.

Notebook Allowlist

Restrict AI access to specific notebooks using pattern-based access control. When configured, only matching notebooks (and their contents) are visible — all other notebooks are hidden.

Quick Setup

JSON config (joplin-mcp.json):

{
  "token": "your_token",
  "notebook_allowlist": ["Work", "Projects/Public"]
}

Environment variable:

export JOPLIN_NOTEBOOK_ALLOWLIST="Work,Projects/Public"

Pattern Syntax

Patterns use gitignore/gitwildmatch semantics:

Negation patterns always win over positive patterns (any negation match on a path or ancestor denies access).

How It Works

• Hierarchical access: Allowing a parent notebook grants access to all its children. Allowing Projects means notes in Projects/Work/Tasks are also accessible.

• Read protection: get_note, get_note_resources, find_notes, get_links — notes in blocked notebooks are filtered out or rejected.

• Write protection: create_note, update_note, edit_note, delete_note — operations on notes in blocked notebooks are rejected.

• Notebook operations: list_notebooks only shows accessible notebooks. create_notebook is rejected both under a blocked parent and at the top level (no parent_name) when an allowlist is set, and update_notebook rejects moves to top-level (parent_name="/") under the same policy — both would let the agent silently move a notebook out of allowlist-enforced scope. To grow the allowlist, create or relocate the notebook in the Joplin UI, then add it to notebook_allowlist and restart the server.

• Search filtering: find_notes results are filtered to only include notes in accessible notebooks.

• Tag operations: tag_note, untag_note, get_tags_by_note enforce access on the note's notebook.

• Error privacy: Blocked access raises a generic "Notebook not accessible" error without revealing notebook names or IDs.

Configuration Examples

Single project focus (notebook name containing a space):

{ "notebook_allowlist": ["Work Projects"] }

Multiple notebooks with exclusion:

{ "notebook_allowlist": ["Projects", "!Projects/Secret", "AI", "Reference"] }

Glob patterns:

{ "notebook_allowlist": ["Projects/*", "!Projects/Private"] }

No allowlist (default) — all notebooks accessible:

{ "notebook_allowlist": null }

Startup Behavior

At server startup, the allowlist is validated and logged:

• Each entry is resolved against existing notebooks

• Unresolvable patterns trigger warnings (but never block startup)

• If the allowlist resolves to zero accessible notebooks, a warning is logged

Advanced Configuration

Development Installation

For developers or users who want the latest features:

git clone https://github.com/alondmnt/joplin-mcp.git
cd joplin-mcp
python bootstrap.py

bootstrap.py is cross-platform: it offers to create a ./venv, runs pip install -e ., then launches the interactive installer. Pass --no-venv to install into whichever Python is already active.

Manual Configuration

If you prefer manual setup or the script doesn't work:

Note on uvx: uvx runs Python applications without permanently installing them (requires uv: pip install uv). It can read and write user configuration files (e.g., Claude/Jan configs), so uvx --from joplin-mcp joplin-mcp-install works for setup just like a pip install.

Version pinning (optional): For long‑lived client configs or CI, you can pin or range-constrain the version for reproducibility, e.g. uvx --from joplin-mcp==0.4.1 joplin-mcp-install or uvx --from 'joplin-mcp>=0.4,<0.5' joplin-mcp-install.

1. Create Configuration File

Create joplin-mcp.json in your project directory:

{
  "token": "your_api_token_here",
  "host": "localhost", 
  "port": 41184,
  "timeout": 30,
  "verify_ssl": false
}

2. Claude Desktop Configuration

Add to your claude_desktop_config.json:

Option A: Using uvx (Zero-install)

{
  "mcpServers": {
    "joplin": {
      "command": "uvx",
      "args": ["--from", "joplin-mcp", "joplin-mcp-server"],
      "env": {
        "JOPLIN_TOKEN": "your_token_here"
      }
    }
  }
}

Requires uv installed: pip install uv

Option B: Using installed package

{
  "mcpServers": {
    "joplin": {
      "command": "joplin-mcp-server",
      "env": {
        "JOPLIN_TOKEN": "your_token_here"
      }
    }
  }
}

3. More Client Configuration Examples

For additional client configurations including different transport options (HTTP, SSE, Streamable HTTP), see client-config.json.example.

This file includes configurations for:

• STDIO transport (default, most compatible)

• HTTP transport (basic HTTP server mode)

• SSE transport (recommended for gemini-cli and OpenAI clients)

• Streamable HTTP transport (advanced web clients)

• HTTP-compat transport (bridges modern /mcp JSON-RPC with legacy /sse//messages clients)

Tool Permission Configuration

Fine-tune which operations the AI can perform by editing your config:

{
  "tools": {
    "create_note": true,
    "update_note": true,
    "delete_note": false,
    "create_notebook": true,
    "update_notebook": false,
    "delete_notebook": false,
    "create_tag": true,
    "update_tag": false,
    "delete_tag": false,
    "get_all_notes": false,
    "import_from_file": true
  }
}

Environment Variables

Alternative to JSON configuration:

# Connection settings
export JOPLIN_TOKEN="your_api_token_here"
export JOPLIN_HOST="localhost"
export JOPLIN_PORT="41184"
export JOPLIN_TIMEOUT="30"

Per-Tool Env Vars

Every tool can be toggled individually via JOPLIN_TOOL_<NAME>=true|false. These take precedence over config file settings.

Notebook Allowlist Env Var

HTTP Transport Support

The server supports both STDIO and HTTP transports:

# STDIO (default)
joplin-mcp-server --config ~/.joplin-mcp.json

# HTTP transport (development, from repo)
PYTHONPATH=src python -m joplin_mcp.server --transport http --port 8000 --config ./joplin-mcp.json

# Opt-in HTTP compatibility bundle (modern + legacy SSE endpoints)
PYTHONPATH=src python -m joplin_mcp.server --transport http-compat --port 8000 --config ./joplin-mcp.json
# or keep --transport http and export MCP_HTTP_COMPAT=1/true to toggle the same behavior.

HTTP client config

Note: Claude Desktop currently uses STDIO transport and does not consume HTTP/SSE configs directly. The following example applies to clients that support network transports.

{
  "mcpServers": {
    "joplin": {
      "transport": "http",
      "url": "http://localhost:8000/mcp"
    }
  }
}

Configuration Reference

Basic Settings

Tool Permissions

Notebook Allowlist

Content Exposure (Privacy Settings)

Docker

Run the MCP server in a container. Default transport is HTTP for broad compatibility; switch via environment variables.

Build

docker build -t joplin-mcp .

Run (HTTP default)

docker run --rm \
  -p 8000:8000 \
  -e JOPLIN_TOKEN=your_api_token \
  joplin-mcp

With mounted config

docker run --rm \
  -p 8000:8000 \
  -v $PWD/joplin-mcp.json:/config/joplin-mcp.json:ro \
  joplin-mcp

Choose transport

• SSE (streaming): -e MCP_TRANSPORT=sse

• Streamable HTTP: -e MCP_TRANSPORT=streamable-http

• STDIO (no port): -e MCP_TRANSPORT=stdio

Example (SSE):

docker run --rm \
  -p 8000:8000 \
  -e JOPLIN_TOKEN=your_api_token \
  -e MCP_TRANSPORT=sse \
  joplin-mcp

The container listens on 0.0.0.0:8000 by default. If exposing publicly, place behind a reverse proxy and terminate TLS there. For SSE, ensure proxy keep-alives and buffering are configured appropriately.

Project Structure

• src/joplin_mcp/ - Main package directory

  • fastmcp_server.py - Server implementation with 26 tools and Pydantic validation types

  • config.py - Configuration management (including notebook allowlist)

  • notebook_utils.py - Notebook path resolution, allowlist matching, and caching

  • server.py - Server entrypoint (module and CLI)

  • tools/ - Tool implementations (notes, notebooks, tags)

  • ui_integration.py - UI integration utilities

• docs/ - Documentation (troubleshooting, privacy controls, enhancement proposals)

• tests/ - Unit test suite

• tests/e2e/ - End-to-end tests against a real Joplin Desktop (3.x) via the Web Clipper API; see "Running Tests"

Testing

Test your connection:

# For pip install
joplin-mcp-server --config ~/.joplin-mcp.json

# For development (from repo)
PYTHONPATH=src python -m joplin_mcp.server --config ./joplin-mcp.json

You should see:

Starting Joplin FastMCP Server...
Successfully connected to Joplin!
Found X notebooks, Y notes, Z tags
FastMCP server starting...
Available tools: 26 tools ready

Running Tests

# Unit tests (no Joplin instance required)
pytest tests/ --ignore=tests/e2e

# E2E tests (requires a running Joplin instance)
JOPLIN_TOKEN=your_api_token \
JOPLIN_HOST=localhost \
JOPLIN_PORT=41184 \
pytest tests/e2e/ -v -m e2e --override-ini="addopts="

The E2E suite talks to a real Joplin Desktop via the Web Clipper API and exercises every tool including notebook allowlist enforcement. If JOPLIN_HOST:JOPLIN_PORT is unreachable the suite skips itself, so it's safe to run alongside the unit tests. Requires Joplin 3.x (the trash schema introduced in 3.0 — earlier versions fail with no such column: deleted_time).

Complete Tool Reference